JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles A Mathelier, X Zhao, AW Zhang, F Parcy, R Worsley-Hunt, DJ Arenillas, ... Nucleic acids research 42 (D1), D142-D147, 2014 | 1168 | 2014 |
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles A Mathelier, O Fornes, DJ Arenillas, C Chen, G Denay, J Lee, W Shi, ... Nucleic acids research 44 (D1), D110-D115, 2016 | 1107 | 2016 |
A comparative study of the gut microbiota in immune-mediated inflammatory diseases—does a common dysbiosis exist? JD Forbes, C Chen, NC Knox, RA Marrie, H El-Gabalawy, T de Kievit, ... Microbiome 6 (1), 1-15, 2018 | 340 | 2018 |
Deep feature selection: theory and application to identify enhancers and promoters Y Li, CY Chen, WW Wasserman Journal of Computational Biology 23 (5), 322-336, 2016 | 274 | 2016 |
Proksee: in-depth characterization and visualization of bacterial genomes JR Grant, E Enns, E Marinier, A Mandal, EK Herman, C Chen, M Graham, ... Nucleic Acids Research, gkad326, 2023 | 183 | 2023 |
Evaluation of a commercially-available surrogate virus neutralization test for severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) EJ Valcourt, K Manguiat, A Robinson, JCY Chen, K Dimitrova, C Philipson, ... Diagnostic microbiology and infectious disease 99 (4), 115294, 2021 | 89 | 2021 |
Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features C Chen, Q Morris, JA Mitchell BMC genomics 13 (1), 152, 2012 | 79 | 2012 |
The identification of cis-regulatory elements: A review from a machine learning perspective Y Li, C Chen, AM Kaye, WW Wasserman Biosystems 138, 6-17, 2015 | 76 | 2015 |
Spread of X-chromosome inactivation into autosomal sequences: role for DNA elements, chromatin features and chromosomal domains AM Cotton, CY Chen, LL Lam, WW Wasserman, MS Kobor, CJ Brown Human molecular genetics 23 (5), 1211-1223, 2014 | 73 | 2014 |
Chronic treatment with aripiprazole induces differential gene expression in the rat frontal cortex MC Cheng, DL Liao, CA Hsiung, CY Chen, YC Liao, CH Chen International Journal of Neuropsychopharmacology 11 (2), 207-216, 2008 | 70 | 2008 |
On the identification of potential regulatory variants within genome wide association candidate SNP sets C Chen, IS Chang, CA Hsiung, WW Wasserman BMC medical genomics 7 (1), 34, 2014 | 65 | 2014 |
YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses C Chen, W Shi, B Balaton, AM Matthews, Y Li, DJ Arenillas, A Mathelier, ... Scientific Reports, 2016 | 41 | 2016 |
Nuclear RNA sequencing of the mouse erythroid cell transcriptome JA Mitchell, I Clay, D Umlauf, C Chen, CA Moir, CH Eskiw, S Schoenfelder, ... PloS one 7 (11), e49274, 2012 | 34 | 2012 |
Detection of antimicrobial resistance using proteomics and the comprehensive antibiotic resistance database: a case study C Chen, CG Clark, S Langner, DA Boyd, A Bharat, SJ McCorrister, ... PROTEOMICS–Clinical Applications 14 (4), 1800182, 2020 | 33 | 2020 |
PAX6 MiniPromoters drive restricted expression from rAAV in the adult mouse retina JW Hickmott, C Chen, DJ Arenillas, AJ Korecki, SL Lam, LL Molday, ... Molecular Therapy-Methods & Clinical Development 3, 16051, 2016 | 24 | 2016 |
Chlamydia evasion of neutrophil host defense results in NLRP3 dependent myeloid-mediated sterile inflammation through the purinergic P2X7 receptor C Yang, L Lei, JWM Collins, M Briones, L Ma, GL Sturdevant, H Su, ... Nature communications 12 (1), 1-16, 2021 | 23 | 2021 |
R432 is a key residue for the multiple functions of Ndt80p in Candida albicans YL Yang, CW Wang, SN Leaw, IC Wang, CG Chen, JC Fan, KY Tseng, ... Cellular and Molecular Life Sciences 69 (6), 1011-1023, 2012 | 17 | 2012 |
Plasmid negative regulation of CPAF expression is Pgp4 independent and restricted to invasive Chlamydia trachomatis Biovars MJ Patton, CY Chen, C Yang, S McCorrister, C Grant, G Westmacott, ... MBio 9 (1), 2018 | 16 | 2018 |
Systematic evaluation of supervised machine learning for sample origin prediction using metagenomic sequencing data JC Chen, AD Tyler Biology Direct 15, 2020 | 13 | 2020 |
MrBac: a web server for draft metabolic network reconstructions for bacteria YC Liao, JCY Chen, MH Tsai, YH Tang, FC Chen, CA Hsiung Bioengineered bugs 2 (5), 284-287, 2011 | 12 | 2011 |