| Reconstruction of biochemical networks in microorganisms AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson Nature Reviews Microbiology 7 (2), 129-143, 2009 | 968 | 2009 |
| Integrating high-throughput and computational data elucidates bacterial networks MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson Nature 429 (6987), 92-96, 2004 | 938 | 2004 |
| Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox SA Becker, AM Feist, ML Mo, G Hannum, BØ Palsson, MJ Herrgard Nature protocols 2 (3), 727-738, 2007 | 910 | 2007 |
| Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model NC Duarte, MJ Herrgård, BØ Palsson Genome research 14 (7), 1298-1309, 2004 | 760 | 2004 |
| Network-based prediction of human tissue-specific metabolism T Shlomi, MN Cabili, MJ Herrgård, BØ Palsson, E Ruppin Nature biotechnology 26 (9), 1003-1010, 2008 | 647 | 2008 |
| A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008 | 603 | 2008 |
| Connecting extracellular metabolomic measurements to intracellular flux states in yeast ML Mo, BØ Palsson, MJ Herrgård BMC systems biology 3 (1), 37, 2009 | 446 | 2009 |
| Systematic evaluation of methods for integration of transcriptomic data into constraint-based models of metabolism D Machado, M Herrgård PLoS Comput Biol 10 (4), e1003580, 2014 | 320 | 2014 |
| Multiplex metabolic pathway engineering using CRISPR/Cas9 in Saccharomyces cerevisiae T Jakočiūnas, I Bonde, M Herrgård, SJ Harrison, M Kristensen, ... Metabolic engineering 28, 213-222, 2015 | 311 | 2015 |
| Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae MJ Herrgård, BS Lee, V Portnoy, BØ Palsson Genome research 16 (5), 627-635, 2006 | 269 | 2006 |
| Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli AM Feist, DC Zielinski, JD Orth, J Schellenberger, MJ Herrgard, ... Metabolic engineering 12 (3), 173-186, 2010 | 232 | 2010 |
| Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function WP Inskeep, DB Rusch, ZJ Jay, MJ Herrgard, MA Kozubal, ... PloS one 5 (3), e9773, 2010 | 186 | 2010 |
| Reconstruction of microbial transcriptional regulatory networks MJ Herrgård, MW Covert, BØ Palsson Current opinion in biotechnology 15 (1), 70-77, 2004 | 183 | 2004 |
| Reconciling gene expression data with known genome-scale regulatory network structures MJ Herrgård, MW Covert Genome Research 13 (11), 2423-2434, 2003 | 149 | 2003 |
| Methods and systems to identify operational reaction pathways BO Palsson, MW Covert, M Herrgard US Patent 7,734,420, 2010 | 142 | 2010 |
| Establishing a synthetic pathway for high-level production of 3-hydroxypropionic acid in Saccharomyces cerevisiae via β-alanine I Borodina, KR Kildegaard, NB Jensen, TH Blicher, J Maury, S Sherstyk, ... Metabolic Engineering 27, 57-64, 2015 | 131 | 2015 |
| Identification of genome-scale metabolic network models using experimentally measured flux profiles MJ Herrgård, SS Fong, BØ Palsson PLoS Comput Biol 2 (7), e72, 2006 | 131 | 2006 |
| Genome-scale analysis of the uses of the Escherichia coli genome: model-driven analysis of heterogeneous data sets TE Allen, MJ Herrgård, M Liu, Y Qiu, JD Glasner, FR Blattner, BØ Palsson Journal of bacteriology 185 (21), 6392-6399, 2003 | 116 | 2003 |
| The YNP metagenome project: environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem WP Inskeep, ZJ Jay, SG Tringe, M Herrgard, DB Rusch Frontiers in microbiology 4, 67, 2013 | 111 | 2013 |
| Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations TE Sandberg, M Pedersen, RA LaCroix, A Ebrahim, M Bonde, ... Molecular biology and evolution 31 (10), 2647-2662, 2014 | 110 | 2014 |
Bernhard PalssonUCSDVerified email at eng.ucsd.edu
