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Johan Bengtsson-Palme
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Towards a unified paradigm for sequence‐based identification of fungi
U Kõljalg, RH Nilsson, K Abarenkov, L Tedersoo, AFS Taylor, M Bahram, ...
Molecular ecology 22 (21), 5271-5277, 2013
32792013
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications
RH Nilsson, KH Larsson, AFS Taylor, J Bengtsson-Palme, TS Jeppesen, ...
Nucleic acids research 47 (D1), D259-D264, 2019
22842019
Structure and function of the global topsoil microbiome
M Bahram, F Hildebrand, SK Forslund, JL Anderson, NA Soudzilovskaia, ...
Nature 560 (7717), 233-237, 2018
15022018
Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
J Bengtsson‐Palme, M Ryberg, M Hartmann, S Branco, Z Wang, A Godhe, ...
Methods in ecology and evolution 4 (10), 914-919, 2013
11882013
Environmental factors influencing the development and spread of antibiotic resistance
J Bengtsson-Palme, E Kristiansson, DGJ Larsson
FEMS Microbiology Reviews, 2017
9722017
Concentrations of antibiotics predicted to select for resistant bacteria: proposed limits for environmental regulation
J Bengtsson-Palme, DGJ Larsson
Environment international 86, 140-149, 2016
7942016
Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential
C Pal, J Bengtsson-Palme, E Kristiansson, DGJ Larsson
BMC genomics 16, 1-14, 2015
7262015
BacMet: antibacterial biocide and metal resistance genes database
C Pal, J Bengtsson-Palme, C Rensing, E Kristiansson, DGJ Larsson
Nucleic acids research 42 (D1), D737-D743, 2014
6142014
Metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data
J Bengtsson‐Palme, M Hartmann, KM Eriksson, C Pal, K Thorell, ...
Molecular ecology resources 15 (6), 1403–1414, 2015
4522015
The structure and diversity of human, animal and environmental resistomes
C Pal, J Bengtsson-Palme, E Kristiansson, DGJ Larsson
Microbiome 4, 1-15, 2016
4222016
Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance
DGJ Larsson, A Andremont, J Bengtsson-Palme, KK Brandt, ...
Environment international 117, 132-138, 2018
3622018
Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements
K Pärnänen, A Karkman, J Hultman, C Lyra, J Bengtsson-Palme, ...
Nature communications 9 (1), 3891, 2018
3352018
Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India
J Bengtsson-Palme, F Boulund, J Fick, E Kristiansson, J Larsson
Frontiers in Microbiology 5, 648, 2014
3122014
Antibiotic resistance genes in the environment: prioritizing risks
J Bengtsson-Palme, DG Larsson
Nature Reviews Microbiology 13 (6), 396-396, 2015
2932015
The European technical report on aquatic effect-based monitoring tools under the water framework directive
AS Wernersson, M Carere, C Maggi, P Tusil, P Soldan, A James, ...
Environmental Sciences Europe 27, 1-11, 2015
2812015
Elucidating selection processes for antibiotic resistance in sewage treatment plants using metagenomics
J Bengtsson-Palme, R Hammaren, C Pal, M Östman, B Björlenius, ...
Science of the Total Environment 572, 697-712, 2016
2732016
A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts
RH Nilsson, L Tedersoo, M Ryberg, E Kristiansson, M Hartmann, ...
Microbes and environments 30 (2), 145-150, 2015
2572015
The human gut microbiome as a transporter of antibiotic resistance genes between continents
J Bengtsson-Palme, M Angelin, M Huss, S Kjellqvist, E Kristiansson, ...
Antimicrobial agents and chemotherapy 59 (10), 6551-6560, 2015
2392015
Minimal selective concentrations of tetracycline in complex aquatic bacterial biofilms
SV Lundström, M Östman, J Bengtsson-Palme, C Rutgersson, M Thoudal, ...
Science of the Total Environment 553, 587-595, 2016
2232016
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences
RH Nilsson, L Tedersoo, K Abarenkov, M Ryberg, E Kristiansson, ...
MycoKeys 4, 37-63, 2012
2212012
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