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Mathieu Almeida
Mathieu Almeida
Research Fellow at INRAE MetaGenoPolis, France
Bestätigte E-Mail-Adresse bei inra.fr
Titel
Zitiert von
Zitiert von
Jahr
Enterotypes of the human gut microbiome.
DJ Arumugam M, Raes J, Pelletier E, Le Paslier D, ...
Nature 473 (7346), 174-180, 2011
81242011
A metagenome-wide association study of gut microbiota in type 2 diabetes
J Qin, Y Li, Z Cai, S Li, J Zhu, F Zhang, S Liang, W Zhang, Y Guan, ...
Nature, 2012
68092012
Richness of human gut microbiome correlates with metabolic markers
E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ...
Nature 500 (7464), 541-546, 2013
45822013
Dietary intervention impact on gut microbial gene richness
A Cotillard, SP Kennedy, LC Kong, E Prifti, N Pons, E Le Chatelier, ...
Nature 500 (7464), 585-588, 2013
20402013
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
K Forslund, F Hildebrand, T Nielsen, G Falony, E Le Chatelier, ...
Nature 528 (7581), 262, 2015
19622015
Human gut microbes impact host serum metabolome and insulin sensitivity
HK Pedersen, V Gudmundsdottir, HB Nielsen, T Hyotylainen, T Nielsen, ...
Nature 535 (7612), 376-381, 2016
17772016
Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology
MC Dao, A Everard, J Aron-Wisnewsky, N Sokolovska, E Prifti, EO Verger, ...
Gut 65 (3), 426-436, 2016
17352016
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ...
Nature biotechnology 32 (8), 822-828, 2014
10702014
Quantifying diet-induced metabolic changes of the human gut microbiome
S Shoaie, P Ghaffari, P Kovatcheva-Datchary, A Mardinoglu, P Sen, ...
Cell metabolism 22 (2), 320-331, 2015
3872015
MetaHIT consortium. Richness of human gut microbiome correlates with metabolic markers
E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ...
Nature 500 (7464), 541-546, 2013
3472013
Microbial ecology perturbation in human IgA deficiency
J Fadlallah, H El Kafsi, D Sterlin, C Juste, C Parizot, K Dorgham, G Autaa, ...
Science translational medicine 10 (439), eaan1217, 2018
2562018
MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data
F Plaza Oñate, E Le Chatelier, M Almeida, ACL Cervino, F Gauthier, ...
Bioinformatics 35 (9), 1544-1552, 2019
1062019
Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products
M Almeida, A Hébert, AL Abraham, S Rasmussen, C Monnet, N Pons, ...
BMC genomics 15, 1-16, 2014
942014
Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232
C Delorme, C Bartholini, M Luraschi, N Pons, V Loux, M Almeida, ...
Journal of bacteriology 193 (19), 5581-5582, 2011
472011
Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS
G Bwire, DA Sack, M Almeida, S Li, JB Voeglein, AK Debes, A Kagirita, ...
PLoS neglected tropical diseases 12 (6), e0006492, 2018
462018
Paenibacillus infection with frequent viral coinfection contributes to postinfectious hydrocephalus in Ugandan infants
JN Paulson, BL Williams, C Hehnly, N Mishra, SA Sinnar, L Zhang, ...
Science translational medicine 12 (563), eaba0565, 2020
422020
Comparative methods for fecal sample storage to preserve gut microbial structure and function in an in vitro model of the human colon
C Deschamps, E Fournier, O Uriot, F Lajoie, C Verdier, S Comtet-Marre, ...
Applied Microbiology and Biotechnology 104, 10233-10247, 2020
412020
Direct detection of Shigella in stool specimens by use of a metagenomic approach
J Liu, M Almeida, F Kabir, S Shakoor, S Qureshi, A Zaidi, S Li, ...
Journal of clinical microbiology 56 (2), 10.1128/jcm. 01374-17, 2018
402018
Elevated serum ceramides are linked with obesity-associated gut dysbiosis and impaired glucose metabolism
BD Kayser, E Prifti, M Lhomme, E Belda, MC Dao, J Aron-Wisnewsky, ...
Metabolomics 15, 1-13, 2019
362019
A data integration multi-omics approach to study calorie restriction-induced changes in insulin sensitivity
MC Dao, N Sokolovska, R Brazeilles, S Affeldt, V Pelloux, E Prifti, ...
Frontiers in physiology 9, 1958, 2019
362019
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