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Ke Chen
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Protein-guided RNA dynamics during early ribosome assembly
H Kim, SC Abeysirigunawarden, K Chen, M Mayerle, K Ragunathan, ...
Nature 506 (7488), 334-338, 2014
1642014
Chitosan-mediated synthesis of gold nanoparticles on patterned poly (dimethylsiloxane) surfaces
B Wang, K Chen, S Jiang, F Reincke, W Tong, D Wang, C Gao
Biomacromolecules 7 (4), 1203-1209, 2006
1502006
Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution
J Utrilla, EJ O'Brien, K Chen, D McCloskey, J Cheung, H Wang, ...
Cell Systems 2 (4), 260-271, 2016
1112016
Systematic discovery of uncharacterized transcription factors in Escherichia coli K-12 MG1655
Y Gao, JT Yurkovich, SW Seo, I Kabimoldayev, A Dräger, K Chen, ...
Nucleic Acids Research 46 (20), 10682-10696, 2018
962018
Cellular responses to reactive oxygen species are predicted from molecular mechanisms
L Yang, N Mih, A Anand, JH Park, J Tan, JT Yurkovich, JM Monk, CJ Lloyd, ...
Proceedings of the National Academy of Sciences 116 (28), 14368-14373, 2019
902019
Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation
K Chen, Y Gao, N Mih, EJ O’Brien, L Yang, BO Palsson
Proceedings of the National Academy of Sciences 114 (43), 11548-11553, 2017
882017
Systems biology of the structural proteome
E Brunk, N Mih, J Monk, Z Zhang, EJ O’Brien, SE Bliven, K Chen, ...
BMC Systems Biology 10, 26, 2016
592016
Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration
A Anand, K Chen, L Yang, AV Sastry, CA Olson, S Poudel, Y Seif, ...
Proceedings of the National Academy of Sciences 116 (50), 25287-25292, 2019
572019
OxyR is a convergent target for mutations acquired during adaptation to oxidative stress-prone metabolic states
A Anand, K Chen, E Catoiu, AV Sastry, CA Olson, TE Sandberg, Y Seif, ...
Molecular biology and evolution 37 (3), 660-667, 2020
512020
Adaptive laboratory evolution of Escherichia coli under acid stress
B Du, CA Olson, AV Sastry, X Fang, PV Phaneuf, K Chen, M Wu, R Szubin, ...
Microbiology 166 (2), 141-148, 2020
352020
ssbio: a Python framework for structural systems biology
N Mih, E Brunk, K Chen, E Catoiu, A Sastry, E Kavvas, JM Monk, Z Zhang, ...
Bioinformatics 34 (12), 2155-2157, 2018
332018
Towards a whole-cell model of ribosome biogenesis: Kinetic modeling of SSU assembly
J Earnest, Tyler M., Lai, K Chen, MJ Hallock, JR Williamson, ...
Biophysical Journal 109 (6), 1117, 2015
302015
Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo
Y Gao, HG Lim, H Verkler, R Szubin, D Quach, I Rodionova, K Chen, ...
Nucleic Acids Research 49 (17), 9696-9710, 2021
282021
Assembly of the Five-Way Junction in the Ribosomal Small Subunit Using Hybrid MD-Go̅ Simulations
K Chen, J Eargle, J Lai, H Kim, S Abeysirigunawardena, M Mayerle, ...
J. Phys. Chem. B 116 (23), 6819–6831, 2012
282012
Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4
K Chen, E Roberts, Z Luthey-Schulten
BMC evolutionary biology 9, 1-17, 2009
282009
Functional role of ribosomal signatures
K Chen, J Eargle, K Sarkar, M Gruebele, Z Luthey-Schulten
Biophysical journal 99 (12), 3930-3940, 2010
272010
Computational exploration of dynamic mechanisms of steady state visual evoked potentials at the whole brain level
G Zhang, Y Cui, Y Zhang, H Cao, G Zhou, H Shu, D Yao, Y Xia, K Chen, ...
NeuroImage 237, 118166, 2021
182021
Bacterial fitness landscapes stratify based on proteome allocation associated with discrete aero-types
K Chen, A Anand, C Olson, TE Sandberg, Y Gao, N Mih, BO Palsson
PLoS computational biology 17 (1), e1008596, 2021
162021
Structural intermediates and folding events in the early assembly of the ribosomal small subunit
J Lai, K Chen, Z Luthey-Schulten
The Journal of Physical Chemistry B 117 (42), 13335-13345, 2013
132013
Compression‐inhibited pore formation of polyelectrolyte multilayers containing weak polyanions: a scanning force microscopy study
B Wang, L Liu, K Chen, L Chen, J Feng, C Gao
ChemPhysChem 7 (3), 590-596, 2006
132006
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Articles 1–20