| A promoter-level mammalian expression atlas TF Consortium Nature 507 (7493), 462-470, 2014 | 933* | 2014 |
| HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ... Nucleic acids research 46 (D1), D252-D259, 2018 | 252 | 2018 |
| HOCOMOCO: a comprehensive collection of human transcription factor binding sites models IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ... Nucleic Acids Research 41 (D1), D195-D202, 2013 | 223 | 2013 |
| Effects of cytosine methylation on transcription factor binding sites YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ... BMC Genomics 15 (1), 119, 2014 | 194 | 2014 |
| HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ... Nucleic acids research 44 (D1), D116-D125, 2016 | 174 | 2016 |
| Deep and wide digging for binding motifs in ChIP-Seq data IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev Bioinformatics 26 (20), 2622-2623, 2010 | 154 | 2010 |
| EpiFactors: a comprehensive database of human epigenetic factors and complexes YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ... Database 2015, bav067, 2015 | 124 | 2015 |
| Intergenic, gene terminal, and intragenic CpG islands in the human genome Y Medvedeva, M Fridman, N Oparina, D Malko, E Ermakova, ... BMC genomics 11 (1), 48, 2010 | 88 | 2010 |
| From binding motifs in ChIP-seq data to improved models of transcription factor binding sites I KULAKOVSKIY, V LEVITSKY, D OSHCHEPKOV, L BRYZGALOV, ... Journal of Bioinformatics and Computational Biology, 2013 | 60 | 2013 |
| Jaccard index based similarity measure to compare transcription factor binding site models IE Vorontsov, IV Kulakovskiy, VJ Makeev Algorithms for Molecular Biology 8 (1), 23, 2013 | 49 | 2013 |
| Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal D Papatsenko, H Darr, IV Kulakovskiy, A Waghray, VJ Makeev, ... Stem Cell Reports 5 (2), 207-220, 2015 | 43 | 2015 |
| Architectural proteins Pita, Zw5, and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila N Zolotarev, A Fedotova, O Kyrchanova, A Bonchuk, AA Penin, AS Lando, ... Nucleic acids research 44 (15), 7228-7241, 2016 | 40 | 2016 |
| Application of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data VG Levitsky, IV Kulakovskiy, NI Ershov, DY Oshchepkov, VJ Makeev, ... BMC genomics 15 (1), 80, 2014 | 36 | 2014 |
| Motif discovery and motif finding from genome-mapped DNase footprint data IV Kulakovskiy, AV Favorov, VJ Makeev Bioinformatics 25 (18), 2318-2325, 2009 | 36 | 2009 |
| Discovery of DNA motifs recognized by transcription factors through integration of different experimental sources IV Kulakovskiy, VJ Makeev Biophysics 54 (6), 667-674, 2009 | 33 | 2009 |
| Spi-1/PU. 1 activates transcription through clustered DNA occupancy in erythroleukemia M Ridinger-Saison, V Boeva, P Rimmelé, I Kulakovskiy, I Gallais, ... Nucleic Acids Research 40 (18), 8927-8941, 2012 | 29 | 2012 |
| PERFECTOS-APE-predicting regulatory functional effect of SNPs by approximate P-value estimation IE Vorontsov, IV Kulakovskiy, G Khimulya, DD Nikolaeva, VJ Makeev International Conference on Bioinformatics Models, Methods and Algorithms 2 …, 2015 | 26 | 2015 |
| Sequence-based model of gap gene regulatory network K Kozlov, V Gursky, I Kulakovskiy, M Samsonova BMC Genomics 15 (Suppl 12), S6, 2014 | 25 | 2014 |
| Early B-cell factor 1 (EBF1) is critical for transcriptional control of SLAMF1 gene in human B cells AM Schwartz, LV Putlyaeva, M Covich, AV Klepikova, KA Akulich, ... Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (10 …, 2016 | 22 | 2016 |
| High‐quality genome assembly of Capsella bursa‐pastoris reveals asymmetry of regulatory elements at early stages of polyploid genome evolution AS Kasianov, AV Klepikova, IV Kulakovskiy, ES Gerasimov, AV Fedotova, ... The Plant Journal 91 (2), 278-291, 2017 | 19 | 2017 |
Vsevolod MakeevVavilov Institute of General Genetics, Department of computational systems biologyVerified email at vigg.ru
