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Kelly Street
Kelly Street
Assistant Professor of Population and Public Health Sciences, Keck School of Medicine of USC
Verified email at usc.edu - Homepage
Title
Cited by
Cited by
Year
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
K Street, D Risso, RB Fletcher, D Das, J Ngai, N Yosef, E Purdom, ...
BMC genomics 19, 1-16, 2018
17492018
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia
DH Brann, T Tsukahara, C Weinreb, M Lipovsek, K Van den Berge, ...
Science advances 6 (31), eabc5801, 2020
1379*2020
Trajectory-based differential expression analysis for single-cell sequencing data
K Van den Berge, H Roux de Bézieux, K Street, W Saelens, R Cannoodt, ...
Nature communications 11 (1), 1201, 2020
4282020
Progressive immune dysfunction with advancing disease stage in renal cell carcinoma
DA Braun, K Street, KP Burke, DL Cookmeyer, T Denize, CB Pedersen, ...
Cancer Cell 39 (5), 632-648. e8, 2021
2552021
A multimodal cell census and atlas of the mammalian primary motor cortex
Principal manuscript editors, Analysis coordination, ...
Nature 598 (7879), 86-102, 2021
2532021
Deconstructing olfactory stem cell trajectories at single-cell resolution
RB Fletcher, D Das, L Gadye, KN Street, A Baudhuin, A Wagner, MB Cole, ...
Cell stem cell 20 (6), 817-830. e8, 2017
2032017
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ...
Nature 598 (7879), 103-110, 2021
1872021
Bacterial microbiome of breast milk and child saliva from low-income Mexican-American women and children
V Davé, K Street, S Francis, A Bradman, L Riley, B Eskenazi, N Holland
Pediatric research 79 (6), 846-854, 2016
782016
Injury activates transient olfactory stem cell states with diverse lineage capacities
L Gadye, D Das, MA Sanchez, K Street, A Baudhuin, A Wagner, MB Cole, ...
Cell stem cell 21 (6), 775-790. e9, 2017
712017
An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types
Z Yao, H Liu, F Xie, S Fischer, AS Booeshaghi, RS Adkins, AI Aldridge, ...
Biorxiv, 2020.02. 29.970558, 2020
612020
Urinary phthalate metabolites and biomarkers of oxidative stress in a Mexican-American cohort: variability in early and late pregnancy
N Holland, K Huen, V Tran, K Street, B Nguyen, A Bradman, B Eskenazi
Toxics 4 (1), 7, 2016
612016
PON1 as a model for integration of genetic, epigenetic, and expression data on candidate susceptibility genes
K Huen, P Yousefi, K Street, B Eskenazi, N Holland
Environmental epigenetics 1 (1), dvv003, 2015
412015
Significance analysis for clustering with single-cell RNA-sequencing data
IN Grabski, K Street, RA Irizarry
Nature Methods 20 (8), 1196-1202, 2023
292023
Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference
F Perraudeau, D Risso, K Street, E Purdom, S Dudoit
F1000Research 6, 2017
232017
A multimodal cell census and atlas of the mammalian primary motor cortex
BRAIN Initiative Cell Census Network (BICCN), RS Adkins, AI Aldridge, ...
Biorxiv, 2020.10. 19.343129, 2020
222020
MUC1-C dictates JUN and BAF-mediated chromatin remodeling at enhancer signatures in cancer stem cells
A Bhattacharya, A Fushimi, N Yamashita, M Hagiwara, Y Morimoto, ...
Molecular Cancer Research 20 (4), 556-567, 2022
182022
A guide to trajectory inference and RNA velocity
P Weiler, K Van den Berge, K Street, S Tiberi
Single Cell Transcriptomics: Methods and Protocols, 269-292, 2022
122022
Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
HR de Bézieux, K Van den Berge, K Street, S Dudoit
BioRxiv, 2021.03. 09.433671, 2021
122021
Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects
K Van den Berge, HJ Chou, HR de Bézieux, K Street, D Risso, J Ngai, ...
Cell Reports Methods 2 (11), 2022
72022
Improving replicability in single-cell RNA-Seq cell type discovery with Dune
HR de Bézieux, K Street, S Fischer, K Van den Berge, R Chance, D Risso, ...
BioRxiv, 2020.03. 03.974220, 2020
32020
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