Joaquin Dopazo
Joaquin Dopazo
Head of the Clinical Bioinformatics Area, FPS, Hospital Virgen del Rocio, Sevilla, Spain
Verified email at juntadeandalucia.es - Homepage
Title
Cited by
Cited by
Year
High-throughput functional annotation and data mining with the Blast2GO suite
S Götz, JM García-Gómez, J Terol, TD Williams, SH Nagaraj, MJ Nueda, ...
Nucleic acids research 36 (10), 3420-3435, 2008
25972008
FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes
F Al-Shahrour, R Díaz-Uriarte, J Dopazo
Bioinformatics 20 (4), 578-580, 2004
12382004
Differential expression in RNA-seq: a matter of depth
S Tarazona, F García-Alcalde, J Dopazo, A Ferrer, A Conesa
Genome research 21 (12), 2213-2223, 2011
11542011
A hierarchical unsupervised growing neural network for clustering gene expression patterns
J Herrero, A Valencia, J Dopazo
Bioinformatics 17 (2), 126, 2001
7332001
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
MaQC Consortium
Nature biotechnology 28 (8), 827, 2010
6562010
Changes in the pattern of DNA methylation associate with twin discordance in systemic lupus erythematosus
BM Javierre, AF Fernandez, J Richter, F Al-Shahrour, JI Martin-Subero, ...
Genome research 20 (2), 170-179, 2010
5782010
A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
Z Su, PP Łabaj, S Li, J Thierry-Mieg, D Thierry-Mieg, W Shi, C Wang, ...
Nature biotechnology 32 (9), 903-914, 2014
5362014
Qualimap: evaluating next-generation sequencing alignment data
F García-Alcalde, K Okonechnikov, J Carbonell, LM Cruz, S Götz, ...
Bioinformatics 28 (20), 2678-2679, 2012
4342012
ETE: a python Environment for Tree Exploration
J Huerta-Cepas, J Dopazo, T Gabaldón
BMC bioinformatics 11 (1), 24, 2010
3782010
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling
I Medina, J Carbonell, L Pulido, SC Madeira, S Goetz, A Conesa, ...
Nucleic acids research 38 (suppl_2), W210-W213, 2010
3412010
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments
F Al-Shahrour, P Minguez, J Tárraga, D Montaner, E Alloza, ...
Nucleic acids research 34 (suppl_2), W472-W476, 2006
3202006
Initial genomics of the human nucleolus
A Németh, A Conesa, J Santoyo-Lopez, I Medina, D Montaner, B Péterfia, ...
PLoS Genet 6 (3), e1000889, 2010
3042010
Differential lipid partitioning between adipocytes and tissue macrophages modulates macrophage lipotoxicity and M2/M1 polarization in obese mice
X Prieur, CYL Mok, VR Velagapudi, V Núñez, L Fuentes, D Montaner, ...
Diabetes 60 (3), 797-809, 2011
3032011
FatiGO+: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments
F Al-Shahrour, P Minguez, J Tárraga, I Medina, E Alloza, D Montaner, ...
Nucleic acids research 35 (suppl_2), W91-W96, 2007
2972007
BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments
F Al-Shahrour, P Minguez, JM Vaquerizas, L Conde, J Dopazo
Nucleic acids research 33 (suppl_2), W460-W464, 2005
2952005
PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes
L Conde, JM Vaquerizas, H Dopazo, L Arbiza, J Reumers, F Rousseau, ...
Nucleic acids research 34 (suppl_2), W621-W625, 2006
2562006
Phylogenetic reconstruction using an unsupervised growing neural network that adopts the topology of a phylogenetic tree
J Dopazo, JM Carazo
Journal of molecular evolution 44 (2), 226-233, 1997
2411997
GEPAS: a web-based resource for microarray gene expression data analysis
J Herrero, F Al-Shahrour, R Diaz-Uriarte, A Mateos, JM Vaquerizas, ...
Nucleic acids research 31 (13), 3461-3467, 2003
2312003
Evolutionary pattern of human respiratory syncytial virus (subgroup A): cocirculating lineages and correlation of genetic and antigenic changes in the G glycoprotein.
O García, M Martin, J Dopazo, J Arbiza, S Frabasile, J Russi, M Hortal, ...
Journal of virology 68 (9), 5448-5459, 1994
2221994
Genetic variability and antigenic diversity of foot-and-mouth disease virus
E Domingo, MG Mateu, MA Martínez, J Dopazo, A Moya, F Sobrino
Virus variability, epidemiology and control, 233-266, 1990
1971990
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