Michal Okoniewski
Michal Okoniewski
Scientific IT Services, ETH Zurich
Verified email at id.ethz.ch
Title
Cited by
Cited by
Year
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
S Anders, DJ McCarthy, Y Chen, M Okoniewski, GK Smyth, W Huber, ...
Nature protocols 8 (9), 1765-1786, 2013
10482013
Eight-channel iTRAQ enables comparison of the activity of six leukemogenic tyrosine kinases
A Pierce, RD Unwin, CA Evans, S Griffiths, L Carney, L Zhang, ...
Molecular & Cellular Proteomics 7 (5), 853-863, 2008
3192008
Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations
MJ Okoniewski, CJ Miller
BMC bioinformatics 7 (1), 1-14, 2006
2482006
Autoregulation of the nonsense-mediated mRNA decay pathway in human cells
H Yepiskoposyan, F Aeschimann, D Nilsson, M Okoniewski, ...
Rna 17 (12), 2108-2118, 2011
2302011
Sox10 promotes the formation and maintenance of giant congenital naevi and melanoma
O Shakhova, D Zingg, SM Schaefer, L Hari, G Civenni, J Blunschi, ...
Nature cell biology 14 (8), 882-890, 2012
2172012
The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets–improving meta-analysis and prediction of prognosis
AH Sims, GJ Smethurst, Y Hey, MJ Okoniewski, SD Pepper, A Howell, ...
BMC medical genomics 1 (1), 1-14, 2008
1592008
microRNA profiling in Epstein–Barr virus-associated B-cell lymphoma
J Imig, N Motsch, JY Zhu, S Barth, M Okoniewski, T Reineke, M Tinguely, ...
Nucleic acids research 39 (5), 1880-1893, 2011
1572011
SparkSeq: fast, scalable and cloud-ready tool for the interactive genomic data analysis with nucleotide precision
MS Wiewiórka, A Messina, A Pacholewska, S Maffioletti, P Gawrysiak, ...
Bioinformatics 30 (18), 2652-2653, 2014
1262014
Complement is a central mediator of radiotherapy-induced tumor-specific immunity and clinical response
L Surace, V Lysenko, AO Fontana, V Cecconi, H Janssen, A Bicvic, ...
Immunity 42 (4), 767-777, 2015
1082015
New insights into the performance of human whole-exome capture platforms
J Meienberg, K Zerjavic, I Keller, M Okoniewski, A Patrignani, K Ludin, ...
Nucleic acids research 43 (11), e76-e76, 2015
1052015
X: Map: annotation and visualization of genome structure for Affymetrix exon array analysis
T Yates, MJ Okoniewski, CJ Miller
Nucleic acids research 36 (suppl_1), D780-D786, 2007
862007
Asexual expansion of Toxoplasma gondii merozoites is distinct from tachyzoites and entails expression of non-overlapping gene families to attach, invade, and replicate within …
AB Hehl, WU Basso, C Lippuner, C Ramakrishnan, M Okoniewski, ...
BMC genomics 16 (1), 1-16, 2015
792015
Transcriptional analysis of South African cassava mosaic virus-infected susceptible and tolerant landraces of cassava highlights differences in resistance, basal defense and …
F Allie, EJ Pierce, MJ Okoniewski, C Rey
BMC genomics 15 (1), 1-30, 2014
702014
RNA Seq analysis of the Eimeria tenella gametocyte transcriptome reveals clues about the molecular basis for sexual reproduction and oocyst biogenesis
RA Walker, PA Sharman, CM Miller, C Lippuner, M Okoniewski, ...
BMC genomics 16 (1), 1-20, 2015
642015
Radiotherapy of human sarcoma promotes an intratumoral immune effector signature
A Sharma, B Bode, G Studer, H Moch, M Okoniewski, A Knuth, ...
Clinical Cancer Research 19 (17), 4843-4853, 2013
622013
High correspondence between Affymetrix exon and standard expression arrays
MJ Okoniewski, Y Hey, SD Pepper, CJ Miller
Biotechniques 42 (2), 181-185, 2007
622007
Comprehensive analysis of affymetrix exon arrays using BioConductor
MJ Okoniewski, CJ Miller
PLoS computational biology 4 (2), e6, 2008
602008
An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data
MJ Okoniewski, T Yates, S Dibben, CJ Miller
Genome biology 8 (5), 1-9, 2007
582007
PGC-1α determines light damage susceptibility of the murine retina
A Egger, M Samardzija, V Sothilingam, N Tanimoto, C Lange, S Salatino, ...
PLoS One 7 (2), e31272, 2012
522012
AnGeLi: a tool for the analysis of gene lists from fission yeast
DA Bitton, F Schubert, S Dey, M Okoniewski, GC Smith, S Khadayate, ...
Frontiers in genetics 6, 330, 2015
502015
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Articles 1–20