Gary Bader

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Ruth IsserlinDonnelly Centre, University of TorontoVerified email at utoronto.ca
Christopher HogueIndependentVerified email at blueprint.org
Charles BooneProfessor, Donnelly Centre, University of TorontoVerified email at utoronto.ca
Quaid MorrisComputational and Systems Biology Program, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Chris SanderDana-Farber Cancer Institute, Harvard Medical School, Broad Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Jüri ReimandAssociate professor, Ontario Institute for Cancer Research, University of TorontoVerified email at utoronto.ca
Max FranzUniversity of TorontoVerified email at utoronto.ca
Daniele MericoDeep Genomics Inc.Verified email at deepgenomics.com
Brenda AndrewsDirector, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
John H MorrisUCSFVerified email at cgl.ucsf.edu
John E. DickUniversity of TorontoVerified email at uhnresearch.ca
Emek DemirOHSUVerified email at ohsu.edu
Andrew EmiliBoston University (formerly University of Toronto)Verified email at bu.edu
Amy TongUniversity of TorontoVerified email at utoronto.ca
Alexander R PicoGladstone InstitutesVerified email at gladstone.ucsf.edu
Mike TyersInstitute for Research in Immunology and Cancer, University of MontrealVerified email at umontreal.ca
Igor RodchenkovUniversity of TorontoVerified email at utoronto.ca
Jeff LiuUniversity Health NetworkVerified email at utoronto.ca
Özgün BaburAssistant Professor at University of Massachusetts BostonVerified email at umb.edu
Philip M. KimProfessor, University of TorontoVerified email at kimlab.org

Gary Bader

Professor of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto

Verified email at utoronto.ca - Homepage

Computational Biology Systems Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
An automated method for finding molecular complexes in large protein interaction networks GD Bader, CWV Hogue BMC bioinformatics 4 (1), 1-27, 2003	4770	2003
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry Y Ho, A Gruhler, A Heilbut, GD Bader, L Moore, SL Adams, A Millar, ... Nature 415 (6868), 180-183, 2002	4442	2002
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function D Warde-Farley, SL Donaldson, O Comes, K Zuberi, R Badrawi, P Chao, ... Nucleic acids research 38 (suppl_2), W214-W220, 2010	3051	2010
Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007	2504	2007
Systematic genetic analysis with ordered arrays of yeast deletion mutants AHY Tong, M Evangelista, AB Parsons, H Xu, GD Bader, N Pagé, ... Science 294 (5550), 2364-2368, 2001	2445	2001
Global mapping of the yeast genetic interaction network AHY Tong, G Lesage, GD Bader, H Ding, H Xu, X Xin, J Young, GF Berriz, ... science 303 (5659), 808-813, 2004	2434	2004
The genetic landscape of a cell M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ... science 327 (5964), 425-431, 2010	2339	2010
Functional impact of global rare copy number variation in autism spectrum disorders D Pinto, AT Pagnamenta, L Klei, R Anney, D Merico, R Regan, J Conroy, ... Nature 466 (7304), 368-372, 2010	2122	2010
A draft map of the human proteome MS Kim, SM Pinto, D Getnet, RS Nirujogi, SS Manda, R Chaerkady, ... Nature 509 (7502), 575-581, 2014	2082	2014
International network of cancer genome projects Data coordination centre Kasprzyk (Leader) Arek 1 Stein (Leader) Lincoln D ... Nature 464 (7291), 993-998, 2010	2043	2010
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation D Merico, R Isserlin, O Stueker, A Emili, GD Bader PloS one 5 (11), e13984, 2010	1725	2010
BIND: the biomolecular interaction network database GD Bader, D Betel, CWV Hogue Nucleic acids research 31 (1), 248-250, 2003	1521	2003
A travel guide to Cytoscape plugins R Saito, ME Smoot, K Ono, J Ruscheinski, PL Wang, S Lotia, AR Pico, ... Nature methods 9 (11), 1069-1076, 2012	1305	2012
Pathway Commons, a web resource for biological pathway data EG Cerami, BE Gross, E Demir, I Rodchenkov, Ö Babur, N Anwar, ... Nucleic acids research 39 (suppl_1), D685-D690, 2010	1163	2010
Bioinformatics AD Baxevanis, GD Bader, DS Wishart John Wiley & Sons, 2020	1049	2020
Association analysis identifies 65 new breast cancer risk loci K Michailidou, S Lindström, J Dennis, J Beesley, S Hui, S Kar, A Lemaçon, ... Nature 551 (7678), 92-94, 2017	956	2017
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules AHY Tong, B Drees, G Nardelli, GD Bader, B Brannetti, L Castagnoli, ... Science 295 (5553), 321-324, 2002	890	2002
Molecular classification of ependymal tumors across all CNS compartments, histopathological grades, and age groups KW Pajtler, H Witt, M Sill, DTW Jones, V Hovestadt, F Kratochwil, K Wani, ... Cancer cell 27 (5), 728-743, 2015	854	2015
Subgroup-specific structural variation across 1,000 medulloblastoma genomes PA Northcott, DJH Shih, J Peacock, L Garzia, A Sorana Morrissy, ... Nature 488 (7409), 49-56, 2012	819	2012
Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap Nature Protocols 14, 482–517, 2019	797	2019

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