| Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota S Magnúsdóttir, A Heinken, L Kutt, DA Ravcheev, E Bauer, A Noronha, ... Nature biotechnology 35 (1), 81, 2017 | 268 | 2017 |
| RegPrecise 3.0–a resource for genome-scale exploration of transcriptional regulation in bacteria PS Novichkov, AE Kazakov, DA Ravcheev, SA Leyn, GY Kovaleva, ... BMC genomics 14 (1), 745, 2013 | 215 | 2013 |
| Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes S Magnúsdóttir, D Ravcheev, V de Crécy-Lagard, I Thiele Frontiers in genetics 6, 148, 2015 | 214 | 2015 |
| A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length AV Favorov, MS Gelfand, AV Gerasimova, DA Ravcheev, AA Mironov, ... Bioinformatics 21 (10), 2240-2245, 2005 | 142 | 2005 |
| Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex DA Ravcheev, X Li, H Latif, K Zengler, SA Leyn, YD Korostelev, ... Journal of bacteriology 194 (5), 1145-1157, 2012 | 106 | 2012 |
| Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks DA Ravcheev, A Godzik, AL Osterman, DA Rodionov BMC genomics 14 (1), 873, 2013 | 85 | 2013 |
| Visualization of individual DNA loops and a map of loop domains in the human dystrophin gene OV Iarovaia, A Bystritskiy, D Ravcheev, R Hancock, SV Razin Nucleic acids research 32 (7), 2079-2086, 2004 | 84 | 2004 |
| Comparative genomics of ethanolamine utilization O Tsoy, D Ravcheev, A Mushegian Journal of bacteriology 191 (23), 7157-7164, 2009 | 74 | 2009 |
| Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus DA Rodionov, PS Novichkov, ED Stavrovskaya, IA Rodionova, X Li, ... BMC genomics 12 (S1), S3, 2011 | 60 | 2011 |
| Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae) DA Ravcheev, AV Gerasimova, AA Mironov, MS Gelfand BMC genomics 8 (1), 54, 2007 | 51 | 2007 |
| Redox-responsive repressor Rex modulates alcohol production and oxidative stress tolerance in Clostridium acetobutylicum L Zhang, X Nie, DA Ravcheev, DA Rodionov, J Sheng, Y Gu, S Yang, ... Journal of bacteriology 196 (22), 3949-3963, 2014 | 49 | 2014 |
| The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ... Nucleic acids research 47 (D1), D614-D624, 2019 | 48 | 2019 |
| Inference of the transcriptional regulatory network in Staphylococcus aureus by integration of experimental and genomics-based evidence DA Ravcheev, AA Best, N Tintle, M DeJongh, AL Osterman, PS Novichkov, ... Journal of bacteriology 193 (13), 3228-3240, 2011 | 42 | 2011 |
| Comparative genomics and evolution of regulons of the LacI-family transcription factors DA Ravcheev, MS Khoroshkin, ON Laikova, OV Tsoy, NV Sernova, ... Frontiers in microbiology 5, 294, 2014 | 41 | 2014 |
| Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria DA Ravcheev, AA Best, NV Sernova, MD Kazanov, PS Novichkov, ... BMC genomics 14 (1), 94, 2013 | 37 | 2013 |
| Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima DA Rodionov, IA Rodionova, X Li, DA Ravcheev, Y Tarasova, VA Portnoy, ... Frontiers in microbiology 4, 244, 2013 | 37 | 2013 |
| Regulation and evolution of malonate and propionate catabolism in proteobacteria IA Suvorova, DA Ravcheev, MS Gelfand Journal of bacteriology 194 (12), 3234-3240, 2012 | 31 | 2012 |
| Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota DA Ravcheev, I Thiele Frontiers in microbiology 5, 674, 2014 | 29 | 2014 |
| Comparative genomic analysis of the hexuronate metabolism genes and their regulation in gammaproteobacteria IA Suvorova, MN Tutukina, DA Ravcheev, DA Rodionov, ON Ozoline, ... Journal of bacteriology 193 (15), 3956-3963, 2011 | 29 | 2011 |
| Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease A Heinken, DA Ravcheev, F Baldini, L Heirendt, RMT Fleming, I Thiele Microbiome 7 (1), 75, 2019 | 27* | 2019 |
Ines ThieleNational University of Ireland, GalwayVerified email at nuigalway.ie
