Dmitry Ravcheev
Title
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Year
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
S Magnúsdóttir, A Heinken, L Kutt, DA Ravcheev, E Bauer, A Noronha, ...
Nature biotechnology 35 (1), 81, 2017
2762017
RegPrecise 3.0–a resource for genome-scale exploration of transcriptional regulation in bacteria
PS Novichkov, AE Kazakov, DA Ravcheev, SA Leyn, GY Kovaleva, ...
BMC genomics 14 (1), 1-12, 2013
2222013
Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes
S Magnúsdóttir, D Ravcheev, V de Crécy-Lagard, I Thiele
Frontiers in genetics 6, 148, 2015
2182015
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length
AV Favorov, MS Gelfand, AV Gerasimova, DA Ravcheev, AA Mironov, ...
Bioinformatics 21 (10), 2240-2245, 2005
1432005
Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex
DA Ravcheev, X Li, H Latif, K Zengler, SA Leyn, YD Korostelev, ...
Journal of bacteriology 194 (5), 1145-1157, 2012
1082012
Visualization of individual DNA loops and a map of loop domains in the human dystrophin gene
OV Iarovaia, A Bystritskiy, D Ravcheev, R Hancock, SV Razin
Nucleic acids research 32 (7), 2079-2086, 2004
862004
Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks
DA Ravcheev, A Godzik, AL Osterman, DA Rodionov
BMC genomics 14 (1), 873, 2013
852013
Comparative genomics of ethanolamine utilization
O Tsoy, D Ravcheev, A Mushegian
Journal of bacteriology 191 (23), 7157-7164, 2009
722009
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus
DA Rodionov, PS Novichkov, ED Stavrovskaya, IA Rodionova, X Li, ...
BMC genomics 12 (S1), S3, 2011
612011
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease
A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ...
Nucleic acids research 47 (D1), D614-D624, 2019
532019
Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae)
DA Ravcheev, AV Gerasimova, AA Mironov, MS Gelfand
BMC genomics 8 (1), 54, 2007
512007
Redox-responsive repressor Rex modulates alcohol production and oxidative stress tolerance in Clostridium acetobutylicum
L Zhang, X Nie, DA Ravcheev, DA Rodionov, J Sheng, Y Gu, S Yang, ...
Journal of bacteriology 196 (22), 3949-3963, 2014
492014
Inference of the transcriptional regulatory network in Staphylococcus aureus by integration of experimental and genomics-based evidence
DA Ravcheev, AA Best, N Tintle, M DeJongh, AL Osterman, PS Novichkov, ...
Journal of bacteriology 193 (13), 3228-3240, 2011
432011
Comparative genomics and evolution of regulons of the LacI-family transcription factors
DA Ravcheev, MS Khoroshkin, ON Laikova, OV Tsoy, NV Sernova, ...
Frontiers in microbiology 5, 294, 2014
402014
Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria
DA Ravcheev, AA Best, NV Sernova, MD Kazanov, PS Novichkov, ...
BMC genomics 14 (1), 94, 2013
372013
Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima
DA Rodionov, IA Rodionova, X Li, DA Ravcheev, Y Tarasova, VA Portnoy, ...
Frontiers in microbiology 4, 244, 2013
372013
Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease
A Heinken, DA Ravcheev, F Baldini, L Heirendt, RMT Fleming, I Thiele
Microbiome 7 (1), 75, 2019
31*2019
Regulation and evolution of malonate and propionate catabolism in proteobacteria
IA Suvorova, DA Ravcheev, MS Gelfand
Journal of bacteriology 194 (12), 3234-3240, 2012
312012
Comparative genomic analysis of the hexuronate metabolism genes and their regulation in gammaproteobacteria
IA Suvorova, MN Tutukina, DA Ravcheev, DA Rodionov, ON Ozoline, ...
Journal of bacteriology 193 (15), 3956-3963, 2011
302011
Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota
DA Ravcheev, I Thiele
Frontiers in Microbiology 5, 674, 2014
292014
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Articles 1–20