Alexander Favorov

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Citations	5079	2815
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Olga FavorovaProf. of Mol Biol, RSMU, MoscowVerified email at cardio.ru
Elana J FertigAssociate Professor of Oncology Biostatistics and Bioinformatics, Sidney Kimmel Comprehensive CancerVerified email at jhmi.edu
Vsevolod MakeevVavilov Institute of General Genetics, Department of computational systems biologyVerified email at vigg.ru
Daria GaykalovaAssociate Professor of Otorhinolaryngology - Head and Neck Surgery, University of MarylandVerified email at som.umaryland.edu
Ludmila DanilovaSKCCC at Johns Hopkins; Vavilov Institute of General Genetics RASVerified email at jhmi.edu
Andrey MironovMoscow State University, dept Bioengineering and BioinformaticsVerified email at bioinf.fbb.msu.ru
Theresa GuoUniversity of California, San DiegoVerified email at health.ucsd.edu
Joseph CalifanoProfessor, Department of Surgery, University of California, San DiegoVerified email at ucsd.edu
Genevieve Stein-O'BrienPostdoctoral fellow, Departments of Neuroscience and Oncology Biostatistics, Johns HopkinsVerified email at jhmi.edu
Emily FlamUniversity of PennsylvaniaVerified email at pennmedicine.upenn.edu
Giovanni ParmigianiProfessor Department of Data Science, DFCIVerified email at dfci.harvard.edu
Dmitrijs LvovsVerified email at genetika.ru
Mikhail GelfandDeputy Director, IITP RASVerified email at iitp.ru
Vitalina Bashynska (Bashinskaya)DiagenVerified email at diagen.com.ua
George ChurchHarvard Medical SchoolVerified email at harvard.edu
Eleazar EskinUniversity of California, Los AngelesVerified email at cs.ucla.edu
Timothy BaileyUniversity of Nevada, RenoVerified email at unr.edu
De Moor BartKU Leuven ESAT-StadiusVerified email at esat.kuleuven.be
Mathias VandenbogaertInstitut Pasteur, Paris, FranceVerified email at pasteur.fr
Mireille RégnierEcole polytechniqueVerified email at inria.fr

Alexander Favorov

research associate@oncbiostat.jhu.edu; senior fellow reasearcher@vigg.ru

Verified email at sensi.org - Homepage

Bioinformatics


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Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005	1510	2005
Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005	1510	2005
A promoter-level mammalian expression atlas Fantom Consortium Nature 507 (7493), 462, 2014	1172	2014
Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature methods 13 (4), 310-318, 2016	182	2016
Deep and wide digging for binding motifs in ChIP-Seq data IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev Bioinformatics 26 (20), 2622-2623, 2010	158	2010
A Markov chain Monte Carlo technique for identification of combinations of allelic variants underlying complex diseases in humans AV Favorov, TV Andreewski, MA Sudomoina, OO Favorova, G Parmigiani, ... Genetics 171 (4), 2113-2121, 2005	148	2005
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length AV Favorov, MS Gelfand, AV Gerasimova, DA Ravcheev, AA Mironov, ... Bioinformatics 21 (10), 2240-2245, 2005	147	2005
Exploring massive, genome scale datasets with the GenometriCorr package A Favorov, L Mularoni, LM Cope, Y Medvedeva, AA Mironov, VJ Makeev, ... PLoS Comput Biol 8 (5), e1002529, 2012	138	2012
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ... Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014	105	2014
A review of genome-wide association studies for multiple sclerosis: classical and hypothesis-driven approaches VV Bashinskaya, OG Kulakova, AN Boyko, AV Favorov, OO Favorova Human genetics 134 (11), 1143-1162, 2015	103	2015
Enter the matrix: factorization uncovers knowledge from omics GL Stein-O’Brien, R Arora, AC Culhane, AV Favorov, LX Garmire, ... Trends in Genetics 34 (10), 790-805, 2018	82	2018
RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA LV Danilova, DD Pervouchine, AV Favorov, AA Mironov Journal of bioinformatics and Computational Biology 4 (02), 589-596, 2006	68	2006
Epigenetic regulation of gene expression in cancer: techniques, resources and analysis LT Kagohara, GL Stein-O’Brien, D Kelley, E Flam, HC Wick, LV Danilova, ... Briefings in functional genomics 17 (1), 49-63, 2018	64	2018
A polygenic approach to the study of polygenic diseases D Lvovs, OO Favorova, AV Favorov Acta Naturae (англоязычная версия) 4 (3 (14)), 2012	64	2012
CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data EJ Fertig, J Ding, AV Favorov, G Parmigiani, MF Ochs Bioinformatics 26 (21), 2792-2793, 2010	63	2010
Transcriptional mechanisms of resistance to anti–PD-1 therapy ML Ascierto, A Makohon-Moore, EJ Lipson, JM Taube, TL McMiller, ... Clinical Cancer Research 23 (12), 3168-3180, 2017	57	2017
Genetic polymorphisms, their allele combinations and IFN-β treatment response in Irish multiple sclerosis patients C O’Doherty, A Favorov, S Heggarty, C Graham, O Favorova, M Ochs, ... Pharmacogenomics 10 (7), 1177-1186, 2009	52	2009
Three allele combinations associated with multiple sclerosis OO Favorova, AV Favorov, AN Boiko, TV Andreewski, MA Sudomoina, ... BMC medical genetics 7 (1), 1-9, 2006	52	2006
Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction HS Parker, JT Leek, AV Favorov, M Considine, X Xia, S Chavan, ... Bioinformatics 30 (19), 2757-2763, 2014	50	2014
Motif discovery and motif finding from genome-mapped DNase footprint data IV Kulakovskiy, AV Favorov, VJ Makeev Bioinformatics 25 (18), 2318-2325, 2009	36	2009

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