Alexander Favorov
Alexander Favorov
research; senior fellow
Verified email at - Homepage
Cited by
Cited by
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137-144, 2005
Assessing computational tools for the discovery of transcription factor binding sites
M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ...
Nature biotechnology 23 (1), 137-144, 2005
A promoter-level mammalian expression atlas
Fantom Consortium
Nature 507 (7493), 462, 2014
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ...
Nature methods 13 (4), 310-318, 2016
Deep and wide digging for binding motifs in ChIP-Seq data
IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev
Bioinformatics 26 (20), 2622-2623, 2010
A Markov chain Monte Carlo technique for identification of combinations of allelic variants underlying complex diseases in humans
AV Favorov, TV Andreewski, MA Sudomoina, OO Favorova, G Parmigiani, ...
Genetics 171 (4), 2113-2121, 2005
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length
AV Favorov, MS Gelfand, AV Gerasimova, DA Ravcheev, AA Mironov, ...
Bioinformatics 21 (10), 2240-2245, 2005
Exploring massive, genome scale datasets with the GenometriCorr package
A Favorov, L Mularoni, LM Cope, Y Medvedeva, AA Mironov, VJ Makeev, ...
PLoS Comput Biol 8 (5), e1002529, 2012
Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ...
Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014
A review of genome-wide association studies for multiple sclerosis: classical and hypothesis-driven approaches
VV Bashinskaya, OG Kulakova, AN Boyko, AV Favorov, OO Favorova
Human genetics 134 (11), 1143-1162, 2015
Enter the matrix: factorization uncovers knowledge from omics
GL Stein-O’Brien, R Arora, AC Culhane, AV Favorov, LX Garmire, ...
Trends in Genetics 34 (10), 790-805, 2018
RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA
LV Danilova, DD Pervouchine, AV Favorov, AA Mironov
Journal of bioinformatics and Computational Biology 4 (02), 589-596, 2006
Epigenetic regulation of gene expression in cancer: techniques, resources and analysis
LT Kagohara, GL Stein-O’Brien, D Kelley, E Flam, HC Wick, LV Danilova, ...
Briefings in functional genomics 17 (1), 49-63, 2018
A polygenic approach to the study of polygenic diseases
D Lvovs, OO Favorova, AV Favorov
Acta Naturae (англоязычная версия) 4 (3 (14)), 2012
CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data
EJ Fertig, J Ding, AV Favorov, G Parmigiani, MF Ochs
Bioinformatics 26 (21), 2792-2793, 2010
Transcriptional mechanisms of resistance to anti–PD-1 therapy
ML Ascierto, A Makohon-Moore, EJ Lipson, JM Taube, TL McMiller, ...
Clinical Cancer Research 23 (12), 3168-3180, 2017
Genetic polymorphisms, their allele combinations and IFN-β treatment response in Irish multiple sclerosis patients
C O’Doherty, A Favorov, S Heggarty, C Graham, O Favorova, M Ochs, ...
Pharmacogenomics 10 (7), 1177-1186, 2009
Three allele combinations associated with multiple sclerosis
OO Favorova, AV Favorov, AN Boiko, TV Andreewski, MA Sudomoina, ...
BMC medical genetics 7 (1), 1-9, 2006
Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction
HS Parker, JT Leek, AV Favorov, M Considine, X Xia, S Chavan, ...
Bioinformatics 30 (19), 2757-2763, 2014
Motif discovery and motif finding from genome-mapped DNase footprint data
IV Kulakovskiy, AV Favorov, VJ Makeev
Bioinformatics 25 (18), 2318-2325, 2009
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