Jaroslav Bendl
Jaroslav Bendl
Icahn School of Medicine at Mount Sinai, New York
Verified email at fit.vutbr.cz - Homepage
Title
Cited by
Cited by
Year
PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations
J Bendl, J Stourac, O Salanda, A Pavelka, ED Wieben, J Zendulka, ...
PLoS Comput Biol 10 (1), e1003440, 2014
3932014
PredictSNP2: a unified platform for accurately evaluating SNP effects by exploiting the different characteristics of variants in distinct genomic regions
J Bendl, M Musil, J Štourač, J Zendulka, J Damborský, J Brezovský
PLoS computational biology 12 (5), e1004962, 2016
932016
The Mount Sinai cohort of large-scale genomic, transcriptomic and proteomic data in Alzheimer's disease
M Wang, ND Beckmann, P Roussos, E Wang, X Zhou, Q Wang, C Ming, ...
Scientific data 5, 180185, 2018
922018
FireProt: energy-and evolution-based computational design of thermostable multiple-point mutants
D Bednar, K Beerens, E Sebestova, J Bendl, S Khare, R Chaloupkova, ...
PLoS Comput Biol 11 (11), e1004556, 2015
802015
HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering
J Bendl, J Stourac, E Sebestova, O Vavra, M Musil, J Brezovsky, ...
Nucleic acids research 44 (W1), W479-W487, 2016
692016
An atlas of chromatin accessibility in the adult human brain
JF Fullard, ME Hauberg, J Bendl, G Egervari, MD Cirnaru, SM Reach, ...
Genome research 28 (8), 1243-1252, 2018
612018
Computer-assisted engineering of the synthetic pathway for biodegradation of a toxic persistent pollutant
NP Kurumbang, P Dvorak, J Bendl, J Brezovsky, Z Prokop, J Damborsky
ACS synthetic biology 3 (3), 172-181, 2014
382014
FireProt: web server for automated design of thermostable proteins
M Musil, J Stourac, J Bendl, J Brezovsky, Z Prokop, J Zendulka, ...
Nucleic acids research 45 (W1), W393-W399, 2017
332017
CommonMind Consortium provides transcriptomic and epigenomic data for Schizophrenia and Bipolar Disorder
GE Hoffman, J Bendl, G Voloudakis, KS Montgomery, L Sloofman, ...
Scientific data 6 (1), 1-14, 2019
242019
Computational tools for designing smart libraries
E Sebestova, J Bendl, J Brezovsky, J Damborsky
Directed Evolution Library Creation, 291-314, 2014
242014
Maximizing the efficiency of multienzyme process by stoichiometry optimization
P Dvorak, NP Kurumbang, J Bendl, J Brezovsky, Z Prokop, J Damborsky
ChemBioChem 15 (13), 1891-1895, 2014
222014
Integration of Alzheimer’s disease genetics and myeloid genomics reveals novel disease risk mechanisms
G Novikova, M Kapoor, TCW Julia, EM Abud, AG Efthymiou, H Cheng, ...
Biorxiv, 694281, 2019
92019
A chromosomal connectome for psychiatric and metabolic risk variants in adult dopaminergic neurons
S Espeso-Gil, T Halene, J Bendl, B Kassim, GB Hutta, M Iskhakova, ...
Genome medicine 12 (1), 1-19, 2020
82020
NewProt–a protein engineering portal
A Schwarte, M Genz, L Skalden, A Nobili, C Vickers, O Melse, R Kuipers, ...
Protein Engineering, Design and Selection 30 (6), 441-447, 2017
72017
Functional interpretation of genetic variants using deep learning predicts impact on chromatin accessibility and histone modification
GE Hoffman, J Bendl, K Girdhar, EE Schadt, P Roussos
Nucleic acids research 47 (20), 10597-10611, 2019
62019
Common genetic variation influencing human white matter microstructure
B Zhao, T Li, Y Yang, X Wang, T Luo, Y Shan, Z Zhu, D Xiong, ...
bioRxiv, 2020
32020
Common schizophrenia risk variants are enriched in open chromatin regions of human glutamatergic neurons
ME Hauberg, J Creus-Muncunill, J Bendl, A Kozlenkov, B Zeng, C Corwin, ...
Nature communications 11 (1), 1-16, 2020
2020
decorate: differential epigenetic correlation test
GE Hoffman, J Bendl, K Girdhar, P Roussos
Bioinformatics 36 (9), 2856-2861, 2020
2020
Sex differences in the human brain transcriptome of cases with schizophrenia
GE Hoffman, Y Ma, KS Montgomery, J Bendl, MK Jaiswal, AK Kozlenkov, ...
bioRxiv, 2020
2020
Common variants contribute to intrinsic human brain functional networks
B Zhao, T Li, SM Smith, D Xiong, X Wang, Y Yang, T Luo, Z Zhu, Y Shan, ...
bioRxiv, 2020
2020
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