Jaroslav Bendl
Jaroslav Bendl
Icahn School of Medicine at Mount Sinai, New York
Verified email at fit.vutbr.cz - Homepage
Title
Cited by
Cited by
Year
PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations
J Bendl, J Stourac, O Salanda, A Pavelka, ED Wieben, J Zendulka, ...
PLoS Comput Biol 10 (1), e1003440, 2014
4312014
The Mount Sinai cohort of large-scale genomic, transcriptomic and proteomic data in Alzheimer's disease
M Wang, ND Beckmann, P Roussos, E Wang, X Zhou, Q Wang, C Ming, ...
Scientific data 5 (1), 1-16, 2018
1302018
PredictSNP2: a unified platform for accurately evaluating SNP effects by exploiting the different characteristics of variants in distinct genomic regions
J Bendl, M Musil, J Štourač, J Zendulka, J Damborský, J Brezovský
PLoS computational biology 12 (5), e1004962, 2016
1042016
FireProt: energy-and evolution-based computational design of thermostable multiple-point mutants
D Bednar, K Beerens, E Sebestova, J Bendl, S Khare, R Chaloupkova, ...
PLoS Comput Biol 11 (11), e1004556, 2015
872015
An atlas of chromatin accessibility in the adult human brain
JF Fullard, ME Hauberg, J Bendl, G Egervari, MD Cirnaru, SM Reach, ...
Genome research 28 (8), 1243-1252, 2018
832018
HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering
J Bendl, J Stourac, E Sebestova, O Vavra, M Musil, J Brezovsky, ...
Nucleic acids research 44 (W1), W479-W487, 2016
752016
CommonMind Consortium provides transcriptomic and epigenomic data for Schizophrenia and Bipolar Disorder
GE Hoffman, J Bendl, G Voloudakis, KS Montgomery, L Sloofman, ...
Scientific data 6 (1), 1-14, 2019
472019
FireProt: web server for automated design of thermostable proteins
M Musil, J Stourac, J Bendl, J Brezovsky, Z Prokop, J Zendulka, ...
Nucleic acids research 45 (W1), W393-W399, 2017
422017
Computer-assisted engineering of the synthetic pathway for biodegradation of a toxic persistent pollutant
NP Kurumbang, P Dvorak, J Bendl, J Brezovsky, Z Prokop, J Damborsky
ACS synthetic biology 3 (3), 172-181, 2014
412014
Maximizing the efficiency of multienzyme process by stoichiometry optimization
P Dvorak, NP Kurumbang, J Bendl, J Brezovsky, Z Prokop, J Damborsky
ChemBioChem 15 (13), 1891-1895, 2014
272014
Computational tools for designing smart libraries
E Sebestova, J Bendl, J Brezovsky, J Damborsky
Directed Evolution Library Creation, 291-314, 2014
242014
Functional interpretation of genetic variants using deep learning predicts impact on chromatin accessibility and histone modification
GE Hoffman, J Bendl, K Girdhar, EE Schadt, P Roussos
Nucleic acids research 47 (20), 10597-10611, 2019
132019
Integration of Alzheimer’s disease genetics and myeloid genomics reveals novel disease risk mechanisms
G Novikova, M Kapoor, TCW Julia, EM Abud, AG Efthymiou, H Cheng, ...
BioRxiv, 694281, 2019
132019
A chromosomal connectome for psychiatric and metabolic risk variants in adult dopaminergic neurons
S Espeso-Gil, T Halene, J Bendl, B Kassim, GB Hutta, M Iskhakova, ...
Genome medicine 12 (1), 1-19, 2020
112020
Common schizophrenia risk variants are enriched in open chromatin regions of human glutamatergic neurons
ME Hauberg, J Creus-Muncunill, J Bendl, A Kozlenkov, B Zeng, C Corwin, ...
Nature communications 11 (1), 1-16, 2020
92020
NewProt–a protein engineering portal
A Schwarte, M Genz, L Skalden, A Nobili, C Vickers, O Melse, R Kuipers, ...
Protein Engineering, Design and Selection 30 (6), 441-447, 2017
82017
Common genetic variation influencing human white matter microstructure
B Zhao, T Li, Y Yang, X Wang, T Luo, Y Shan, Z Zhu, D Xiong, ...
Science 372 (6548), 2021
52021
Integration of Alzheimer’s disease genetics and myeloid genomics identifies disease risk regulatory elements and genes
G Novikova, M Kapoor, TCW Julia, EM Abud, AG Efthymiou, SX Chen, ...
Nature communications 12 (1), 1-14, 2021
32021
Trans-ethnic eQTL meta-analysis of human brain reveals regulatory architecture and candidate causal variants for brain-related traits
B Zeng, J Bendl, R Kosoy, JF Fullard, GE Hoffman, P Roussos
medRxiv, 2021
32021
The three-dimensional landscape of chromatin accessibility in Alzheimer's disease
J Bendl, ME Hauberg, K Girdhar, E Im, JM Vicari, S Rahman, P Dong, ...
BioRxiv, 2021
22021
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