| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 12813 | 2012 |
| T-Coffee: A novel method for fast and accurate multiple sequence alignment C Notredame, DG Higgins, J Heringa Journal of molecular biology 302 (1), 205-217, 2000 | 8299 | 2000 |
| The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression T Derrien, R Johnson, G Bussotti, A Tanzer, S Djebali, H Tilgner, ... Genome research 22 (9), 1775-1789, 2012 | 4882 | 2012 |
| Long noncoding RNAs with enhancer-like function in human cells UA Ĝrom, T Derrien, M Beringer, K Gumireddy, A Gardini, G Bussotti, ... Cell 143 (1), 46-58, 2010 | 1884 | 2010 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1689 | 2014 |
| Nextflow enables reproducible computational workflows P Di Tommaso, M Chatzou, EW Floden, PP Barja, E Palumbo, ... Nature biotechnology 35 (4), 316-319, 2017 | 1261 | 2017 |
| T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension P Di Tommaso, S Moretti, I Xenarios, M Orobitg, A Montanyola, JM Chang, ... Nucleic acids research 39 (suppl_2), W13-W17, 2011 | 1098 | 2011 |
| SAGA: sequence alignment by genetic algorithm C Notredame, DG Higgins Nucleic acids research 24 (8), 1515-1524, 1996 | 757 | 1996 |
| M-Coffee: combining multiple sequence alignment methods with T-Coffee IM Wallace, O O'sullivan, DG Higgins, C Notredame Nucleic acids research 34 (6), 1692-1699, 2006 | 641 | 2006 |
| Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee F Armougom, S Moretti, O Poirot, S Audic, P Dumas, B Schaeli, V Keduas, ... Nucleic acids research 34 (suppl_2), W604-W608, 2006 | 566 | 2006 |
| Recent progress in multiple sequence alignment: a survey C Notredame Pharmacogenomics 3 (1), 131-144, 2002 | 527 | 2002 |
| Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis RA Dalloul, JA Long, AV Zimin, L Aslam, K Beal, L Ann Blomberg, ... PLoS biology 8 (9), e1000475, 2010 | 451 | 2010 |
| Bioinformatics for dummies JM Claverie, C Notredame John Wiley & Sons, 2006 | 429 | 2006 |
| 3DCoffee: combining protein sequences and structures within multiple sequence alignments O O'Sullivan, K Suhre, C Abergel, DG Higgins, C Notredame Journal of molecular biology 340 (2), 385-395, 2004 | 418 | 2004 |
| Epistasis as the primary factor in molecular evolution MS Breen, C Kemena, PK Vlasov, C Notredame, FA Kondrashov Nature 490 (7421), 535-538, 2012 | 400 | 2012 |
| Tcoffee@ igs: a web server for computing, evaluating and combining multiple sequence alignments O Poirot, E O'Toole, C Notredame Nucleic acids research 31 (13), 3503-3506, 2003 | 353 | 2003 |
| COFFEE: an objective function for multiple sequence alignments. C Notredame, L Holm, DG Higgins Bioinformatics (Oxford, England) 14 (5), 407-422, 1998 | 336 | 1998 |
| Recent evolutions of multiple sequence alignment algorithms C Notredame PLoS computational biology 3 (8), e123, 2007 | 304 | 2007 |
| Upcoming challenges for multiple sequence alignment methods in the high-throughput era C Kemena, C Notredame Bioinformatics 25 (19), 2455-2465, 2009 | 286 | 2009 |
| Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project L Andersson, AL Archibald, CD Bottema, R Brauning, SC Burgess, ... Genome biology 16 (1), 1-6, 2015 | 282 | 2015 |
Paolo Di TommasoSeqera LabsVerified email at seqera.io
