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Koen Van den Berge
Koen Van den Berge
Postdoctoral researcher, University of California, Berkeley and Ghent University
Verified email at berkeley.edu
Title
Cited by
Cited by
Year
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia
DH Brann, T Tsukahara, C Weinreb, M Lipovsek, K Van den Berge, ...
Science Advances, eabc5801, 2020
8712020
Trajectory-based differential expression analysis for single-cell sequencing data
K Van den Berge, H Roux de Bézieux, K Street, W Saelens, R Cannoodt, ...
Nature communications 11 (1), 1-13, 2020
2112020
Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications
K Van den Berge, F Perraudeau, C Soneson, MI Love, D Risso, JP Vert, ...
Genome Biology 19 (24), 250126, 2018
1532018
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ...
Nature 598 (7879), 103-110, 2021
118*2021
A multimodal cell census and atlas of the mammalian primary motor cortex
Principal manuscript editors, Analysis coordination, ...
Nature 598 (7879), 86-102, 2021
1002021
RNA sequencing data: hitchhiker's guide to expression analysis
K Van Den Berge, KM Hembach, C Soneson, S Tiberi, L Clement, ...
Annual Review of Biomedical Data Science 2, 2019
972019
stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage
K Van den Berge, C Soneson, MD Robinson, L Clement
Genome biology 18 (1), 151, 2017
682017
A sex-inducing pheromone triggers cell cycle arrest and mate attraction in the diatom Seminavis robusta
S Moeys, J Frenkel, C Lembke, JTF Gillard, V Devos, K Van den Berge, ...
Scientific reports 6 (1), 1-13, 2016
622016
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia. bioRxiv. 2020
DH Brann, T Tsukahara, C Weinreb, M Lipovsek, K Van den Berge, ...
Neuroscience. Google Scholar, 0
41
Hierarchical community detection by recursive partitioning
T Li, L Lei, S Bhattacharyya, K Van den Berge, P Sarkar, PJ Bickel, ...
Journal of the American Statistical Association 117 (538), 951-968, 2022
362022
A multimodal cell census and atlas of the mammalian primary motor cortex
RS Adkins, AI Aldridge, S Allen, SA Ament, X An, E Armand, GA Ascoli, ...
BioRxiv, 2020
182020
Distinctive Growth and Transcriptional Changes of the Diatom Seminavis robusta in Response to Quorum Sensing Related Compounds
F Stock, G Bilcke, S De Decker, CM Osuna-Cruz, K Van den Berge, ...
Frontiers in Microbiology 11, 1240, 2020
162020
Mating type specific transcriptomic response to sex inducing pheromone in the pennate diatom Seminavis robusta
G Bilcke, K Van den Berge, S De Decker, E Bonneure, N Poulsen, ...
The ISME journal 15 (2), 562-576, 2021
152021
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia. Sci Adv 6 (31): eabc5801
DH Brann, T Tsukahara, C Weinreb, M Lipovsek, K Van den Berge, ...
112020
satuRn: Scalable Analysis of differential Transcript Usage for bulk and single-cell RNA-sequencing applications
J Gilis, K Vitting-Seerup, K Van den Berge, L Clement
bioRxiv, 2021
72021
Neurogenomic Profiling Reveals Distinct Gene Expression Profiles Between Brain Parts That Are Consistent in Ophthalmotilapia Cichlids
S Derycke, L Kéver, K Herten, K Van den Berge, M Van Steenberge, ...
Frontiers in neuroscience 12, 136, 2018
72018
Altering the Sex Pheromone Cyclo(l-Pro-l-Pro) of the Diatom Seminavis robusta towards a Chemical Probe
E Bonneure, A De Baets, S De Decker, K Van den Berge, L Clement, ...
International journal of molecular sciences 22 (3), 1037, 2021
52021
Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
HR de Bézieux, K Van den Berge, K Street, S Dudoit
bioRxiv, 2021
52021
Effect of management and age of ploughed out grass–clover on forage maize yield and residual soil nitrogen
M Cougnon, K Van Den Berge, T D'Hose, L Clement, D Reheul
The Journal of Agricultural Science 156 (6), 748-757, 2018
52018
Strain-specific transcriptional responses overshadow salinity effects in a marine diatom sampled along the Baltic Sea salinity cline
E Pinseel, T Nakov, K Van den Berge, KM Downey, KJ Judy, ...
The ISME Journal, 1-12, 2022
42022
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Articles 1–20