| Gut microbiota functions: metabolism of nutrients and other food components I Rowland, G Gibson, A Heinken, K Scott, J Swann, I Thiele, K Tuohy European journal of nutrition 57 (1), 1-24, 2018 | 430 | 2018 |
| Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota S Magnúsdóttir, A Heinken, L Kutt, DA Ravcheev, E Bauer, A Noronha, ... Nature biotechnology 35 (1), 81, 2017 | 276 | 2017 |
| Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019 | 175 | 2019 |
| Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut A Heinken, S Sahoo, RMT Fleming, I Thiele Gut microbes 4 (1), 28-40, 2013 | 174 | 2013 |
| Recon3D enables a three-dimensional view of gene variation in human metabolism E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Dräger, N Mih, F Gatto, ... Nature biotechnology 36 (3), 272, 2018 | 161 | 2018 |
| Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe A Heinken, MT Khan, G Paglia, DA Rodionov, HJM Harmsen, I Thiele Journal of bacteriology 196 (18), 3289-3302, 2014 | 103 | 2014 |
| A systems biology approach to studying the role of microbes in human health I Thiele, A Heinken, RMT Fleming Current opinion in biotechnology 24 (1), 4-12, 2013 | 84 | 2013 |
| Systematic prediction of health-relevant human-microbial co-metabolism through a computational framework A Heinken, I Thiele Gut Microbes 6 (2), 120-130, 2015 | 70 | 2015 |
| Anoxic conditions promote species-specific mutualism between gut microbes in silico A Heinken, I Thiele Applied and environmental microbiology 81 (12), 4049-4061, 2015 | 62 | 2015 |
| Systems biology of host–microbe metabolomics A Heinken, I Thiele Wiley Interdisciplinary Reviews: Systems Biology and Medicine 7 (4), 195-219, 2015 | 59 | 2015 |
| The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ... Nucleic acids research 47 (D1), D614-D624, 2019 | 53 | 2019 |
| A systems biology approach to drug targets in Pseudomonas aeruginosa biofilm G Sigurdsson, RMT Fleming, A Heinken, I Thiele PLoS One 7 (4), e34337, 2012 | 48 | 2012 |
| Quantitative systems pharmacology and the personalized drug–microbiota–diet axis I Thiele, CM Clancy, A Heinken, RMT Fleming Current Opinion in Systems Biology 4, 43-52, 2017 | 27 | 2017 |
| The Microbiome Modeling Toolbox: from microbial interactions to personalized microbial communities F Baldini, A Heinken, L Heirendt, S Magnusdottir, RMT Fleming, I Thiele Bioinformatics 35 (13), 2332-2334, 2019 | 18 | 2019 |
| Personalized modeling of the human gut microbiome reveals distinct bile acid deconjugation and biotransformation potential in healthy and IBD individuals A Heinken, DA Ravcheev, F Baldini, L Heirendt, RMT Fleming, I Thiele BioRxiv, 229138, 2017 | 17 | 2017 |
| Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease A Heinken, DA Ravcheev, F Baldini, L Heirendt, RMT Fleming, I Thiele Microbiome 7 (1), 75, 2019 | 14 | 2019 |
| When metabolism meets physiology: Harvey and Harvetta I Thiele, S Sahoo, A Heinken, L Heirendt, MK Aurich, A Noronha, ... BioRxiv, 255885, 2018 | 9 | 2018 |
| Integrated in vitro and in silico modeling delineates the molecular effects of a synbiotic regimen on colorectal-cancer-derived cells K Greenhalgh, J Ramiro-Garcia, A Heinken, P Ullmann, T Bintener, ... Cell reports 27 (5), 1621-1632. e9, 2019 | 7 | 2019 |
| Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome I Thiele, S Sahoo, A Heinken, J Hertel, L Heirendt, MK Aurich, ... Molecular systems biology 16 (5), e8982, 2020 | 5 | 2020 |
| Reply to" Challenges in modeling the human gut microbiome" S Magnusdottir, A Heinken, RMT Fleming, I Thiele Nature biotechnology 36 (8), 686-692, 2018 | 5 | 2018 |
Ines ThieleNational University of Ireland, GalwayVerified email at nuigalway.ie
