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Minimum information about a microarray experiment (MIAME)—toward standards for microarray data A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ... Nature genetics 29 (4), 365-371, 2001 | 4503 | 2001 |
The PRIDE database and related tools and resources in 2019: improving support for quantification data Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ... Nucleic acids research 47 (D1), D442-D450, 2019 | 2453 | 2019 |
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BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis S Durinck, Y Moreau, A Kasprzyk, S Davis, B De Moor, A Brazma, ... Bioinformatics 21 (16), 3439-3440, 2005 | 1265 | 2005 |
ArrayExpress—a public repository for microarray gene expression data at the EBI A Brazma, H Parkinson, U Sarkans, M Shojatalab, J Vilo, ... Nucleic acids research 31 (1), 68-71, 2003 | 1015 | 2003 |
SARS-CoV-2 receptor ACE2 is an interferon-stimulated gene in human airway epithelial cells and is detected in specific cell subsets across tissues CGK Ziegler, SJ Allon, SK Nyquist, IM Mbano, VN Miao, CN Tzouanas, ... Cell 181 (5), 1016-1035. e19, 2020 | 925 | 2020 |
Gene expression data analysis A Brazma, J Vilo FEBS letters 480 (1), 17-24, 2000 | 826 | 2000 |
Global transcriptional responses of fission yeast to environmental stress D Chen, WM Toone, J Mata, R Lyne, G Burns, K Kivinen, A Brazma, ... Molecular biology of the cell 14 (1), 214-229, 2003 | 812 | 2003 |
The HUPO PSI's molecular interaction format—a community standard for the representation of protein interaction data H Hermjakob, L Montecchi-Palazzi, G Bader, J Wojcik, L Salwinski, ... Nature biotechnology 22 (2), 177-183, 2004 | 697 | 2004 |
ArrayExpress update—simplifying data submissions N Kolesnikov, E Hastings, M Keays, O Melnichuk, YA Tang, E Williams, ... Nucleic acids research 43 (D1), D1113-D1116, 2015 | 688 | 2015 |
ArrayExpress—a public database of microarray experiments and gene expression profiles H Parkinson, M Kapushesky, M Shojatalab, N Abeygunawardena, ... Nucleic acids research 35 (suppl_1), D747-D750, 2007 | 653 | 2007 |
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Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project CF Taylor, D Field, SA Sansone, J Aerts, R Apweiler, M Ashburner, ... Nature biotechnology 26 (8), 889-896, 2008 | 541 | 2008 |
Expression Atlas update—an integrated database of gene and protein expression in humans, animals and plants R Petryszak, M Keays, YA Tang, NA Fonseca, E Barrera, T Burdett, ... Nucleic acids research 44 (D1), D746-D752, 2016 | 501 | 2016 |
ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression H Parkinson, M Kapushesky, N Kolesnikov, G Rustici, M Shojatalab, ... Nucleic acids research 37 (suppl_1), D868-D872, 2009 | 486 | 2009 |
Predicting gene regulatory elements in silico on a genomic scale A Brāzma, I Jonassen, J Vilo, E Ukkonen Genome research 8 (11), 1202-1215, 1998 | 466 | 1998 |
Approaches to the automatic discovery of patterns in biosequences A Brazma, I Jonassen, I Eidhammer, D Gilbert Journal of computational biology 5 (2), 279-305, 1998 | 445 | 1998 |