Davide Risso
Davide Risso
Department of Statistical Sciences, University of Padova, Italy
Verified email at - Homepage
Cited by
Cited by
Normalization of RNA-seq data using factor analysis of control genes or samples
D Risso, J Ngai, TP Speed, S Dudoit
Nature biotechnology 32 (9), 896-902, 2014
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
K Street, D Risso, RB Fletcher, D Das, J Ngai, N Yosef, E Purdom, ...
BMC genomics 19 (1), 1-16, 2018
GC-content normalization for RNA-Seq data
D Risso, K Schwartz, G Sherlock, S Dudoit
BMC bioinformatics 12 (1), 1-17, 2011
Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia
DH Brann, T Tsukahara, C Weinreb, M Lipovsek, K Van den Berge, ...
Science advances 6 (31), eabc5801, 2020
A general and flexible method for signal extraction from single-cell RNA-seq data
D Risso, F Perraudeau, S Gribkova, S Dudoit, JP Vert
Nature communications 9 (1), 1-17, 2018
Normalizing single-cell RNA sequencing data: challenges and opportunities
CA Vallejos, D Risso, A Scialdone, S Dudoit, JC Marioni
Nature methods 14 (6), 565-571, 2017
Orchestrating single-cell analysis with Bioconductor
RA Amezquita, ATL Lun, E Becht, VJ Carey, LN Carpp, L Geistlinger, ...
Nature methods 17 (2), 137-145, 2020
Rapid non-uniform adaptation to conformation-specific KRAS (G12C) inhibition
JY Xue, Y Zhao, J Aronowitz, TT Mai, A Vides, B Qeriqi, D Kim, C Li, ...
Nature 577 (7790), 421-425, 2020
Deconstructing olfactory stem cell trajectories at single-cell resolution
RB Fletcher, D Das, L Gadye, KN Street, A Baudhuin, A Wagner, MB Cole, ...
Cell stem cell 20 (6), 817-830. e8, 2017
Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia
F Gaiti, R Chaligne, H Gu, RM Brand, S Kothen-Hill, RC Schulman, ...
Nature 569 (7757), 576-580, 2019
Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications
K Van den Berge, F Perraudeau, C Soneson, MI Love, D Risso, JP Vert, ...
Genome Biology 19, 2018
Deficiency of microRNA miR-34a expands cell fate potential in pluripotent stem cells
YJ Choi, CP Lin, D Risso, S Chen, TA Kim, MH Tan, JB Li, Y Wu, C Chen, ...
Science 355 (6325), eaag1927, 2017
A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
Z Yao, H Liu, F Xie, S Fischer, RS Adkins, AI Aldridge, SA Ament, ...
Nature 598 (7879), 103-110, 2021
Performance assessment and selection of normalization procedures for single-cell RNA-seq
MB Cole, D Risso, A Wagner, D DeTomaso, J Ngai, E Purdom, S Dudoit, ...
Cell systems 8 (4), 315-328. e8, 2019
A multimodal cell census and atlas of the mammalian primary motor cortex
Principal manuscript editors, Analysis coordination, ...
Nature 598 (7879), 86-102, 2021
How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets
L Peixoto, D Risso, SG Poplawski, ME Wimmer, TP Speed, MA Wood, ...
Nucleic acids research 43 (16), 7664-7674, 2015
Complementary networks of cortical somatostatin interneurons enforce layer specific control
A Naka, J Veit, B Shababo, RK Chance, D Risso, D Stafford, B Snyder, ...
Elife 8, e43696, 2019
Silencing of odorant receptor genes by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron
T Ferreira, SR Wilson, YG Choi, D Risso, S Dudoit, TP Speed, J Ngai
Neuron 81 (4), 847-859, 2014
A spatially resolved brain region-and cell type-specific isoform atlas of the postnatal mouse brain
A Joglekar, A Prjibelski, A Mahfouz, P Collier, S Lin, AK Schlusche, ...
Nature Communications 12 (1), 1-16, 2021
SingleCellExperiment: S4 classes for single cell data
A Lun, D Risso, K Korthauer
R package version 1 (1), 2019
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Articles 1–20