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Aafke A. van den Berg
Aafke A. van den Berg
Data Scientist
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Cited by
Cited by
Year
Chromosome organization by one-sided and two-sided loop extrusion
EJ Banigan, AA van den Berg, HB Brandão, JF Marko, LA Mirny
bioRxiv, 815340, 2019
1252019
Transcription shapes 3D chromatin organization by interacting with loop extrusion
EJ Banigan, W Tang, AA van den Berg, RR Stocsits, G Wutz, HB Brandão, ...
Proceedings of the National Academy of Sciences 120 (11), e2210480120, 2023
1202023
RNA polymerases as moving barriers to condensin loop extrusion
HB Brandão, P Paul, AA van den Berg, DZ Rudner, X Wang, LA Mirny
Proceedings of the National Academy of Sciences 116 (41), 20489-20499, 2019
1162019
Slow unloading leads to DNA-bound β2-sliding clamp accumulation in live Escherichia coli cells
MC Moolman, ST Krishnan, JWJ Kerssemakers, A Van Den Berg, ...
Nature communications 5 (1), 5820, 2014
752014
Single pairs of time-bin-entangled photons
MAM Versteegh, ME Reimer, AA van den Berg, G Juska, ...
Physical Review A 92 (3), 033802, 2015
452015
Crowding-induced transcriptional bursts dictate polymerase and nucleosome density profiles along genes
AA van den Berg, M Depken
Nucleic acids research 45 (13), 7623-7632, 2017
152017
Resolving the subtle details of human DNA alkyltransferase lesion search and repair mechanism by single-molecule studies
S Kono, A van den Berg, M Simonetta, A Mukhortava, EF Garman, ...
Proceedings of the National Academy of Sciences 119 (11), e2116218119, 2022
122022
When motors collide: how transcription and loop-extruding cohesins organize chromatin
E Banigan, W Tang, A van den Berg, R Stocsits, G Wutz, H Brandão, ...
APS March Meeting Abstracts 2022, W06. 005, 2022
12022
Crowding on DNA as a Source of Bursts in mRNA Production
AA van den Berg, SM Depken
Biophysical Journal 108 (2), 535a, 2015
12015
Transcription is a moving barrier to loop extrusion that shapes the genome
E Banigan, W Tang, A van den Berg, R Stocsits, G Wutz, H Brandão, ...
APS March Meeting Abstracts 2023, S08. 005, 2023
2023
RNAP as a Moving Barrier to Loop Extrusion
AA van den Berg, G Wutz, RR Stocsits, H Brandao, G Busslinger, ...
Biophysical Journal 116 (3), 22a, 2019
2019
The structural consequences of one-sided loop extrusion
E Banigan, A van den Berg, H Brandao, J Marko, L Mirny
APS March Meeting Abstracts 2019, S65. 007, 2019
2019
The interplay between polymerase organization and nucleosome occupancy along DNA: How dynamic roadblocks on the DNA induce the formation of RNA polymerase pelotons
AA van den Berg
2017
Supporting Information for: RNA polymerases as moving barriers to condensin loop extrusion
HB Brandão, P Paul, A van den Berg, DZ Rudner, X Wang, LA Mirny
Supplementary material Crowding-induced transcriptional bursts dictate polymerase and nucleocome density profiles along genes
AA van den Berg, M Depken
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