Follow
Badri Adhikari
Title
Cited by
Cited by
Year
DeepSF: deep convolutional neural network for mapping protein sequences to folds
J Hou, B Adhikari, J Cheng
Bioinformatics 34 (8), 1295-1303, 2018
2042018
CONFOLD: Residue‐residue contact‐guided ab initio protein folding
B Adhikari, D Bhattacharya, R Cao, J Cheng
Proteins: Structure, Function, and Bioinformatics 83 (8), 1436-1449, 2015
1832015
DNCON2: improved protein contact prediction using two-level deep convolutional neural networks
B Adhikari, J Hou, J Cheng
Bioinformatics 34 (9), 1466-1472, 2018
1782018
QAcon: single model quality assessment using protein structural and contact information with machine learning techniques
R Cao, B Adhikari, D Bhattacharya, M Sun, J Hou, J Cheng
Bioinformatics 33 (4), 586-588, 2017
932017
CONFOLD2: improved contact-driven ab initio protein structure modeling
B Adhikari, J Cheng
BMC bioinformatics 19, 1-5, 2018
782018
Deep learning-based advances in protein structure prediction
SC Pakhrin, B Shrestha, B Adhikari, DB Kc
International journal of molecular sciences 22 (11), 5553, 2021
682021
Large-scale model quality assessment for improving protein tertiary structure prediction
R Cao, D Bhattacharya, B Adhikari, J Li, J Cheng
Bioinformatics 31 (12), i116-i123, 2015
652015
Deep learning methods for protein torsion angle prediction
H Li, J Hou, B Adhikari, Q Lyu, J Cheng
BMC bioinformatics 18, 1-13, 2017
632017
DEEPCON: protein contact prediction using dilated convolutional neural networks with dropout
B Adhikari
Bioinformatics 36 (2), 470-477, 2020
562020
Chromosome3D: reconstructing three-dimensional chromosomal structures from Hi-C interaction frequency data using distance geometry simulated annealing
B Adhikari, T Trieu, J Cheng
BMC genomics 17, 1-9, 2016
552016
A fully open-source framework for deep learning protein real-valued distances
B Adhikari
Scientific reports 10 (1), 13374, 2020
472020
A dominant TRPV4 variant underlies osteochondrodysplasia in Scottish fold cats
B Gandolfi, S Alamri, WG Darby, B Adhikari, JC Lattimer, R Malik, ...
Osteoarthritis and cartilage 24 (8), 1441-1450, 2016
472016
Protein residue contacts and prediction methods
B Adhikari, J Cheng
Data Mining Techniques for the Life Sciences, 463-476, 2016
392016
Analysis of several key factors influencing deep learning-based inter-residue contact prediction
T Wu, J Hou, B Adhikari, J Cheng
Bioinformatics 36 (4), 1091-1098, 2020
312020
A Novel Variant in CMAH Is Associated with Blood Type AB in Ragdoll Cats
B Gandolfi, RA Grahn, NA Gustafson, D Proverbio, E Spada, B Adhikari, ...
PloS one 13 (3), e0194471, 2018
302018
ConEVA: a toolbox for comprehensive assessment of protein contacts
B Adhikari, J Nowotny, D Bhattacharya, J Hou, J Cheng
BMC bioinformatics 17, 1-12, 2016
272016
Massive integration of diverse protein quality assessment methods to improve template based modeling in CASP11
R Cao, D Bhattacharya, B Adhikari, J Li, J Cheng
Proteins: Structure, Function, and Bioinformatics 84, 247-259, 2016
252016
An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12
C Keasar, LJ McGuffin, B Wallner, G Chopra, B Adhikari, D Bhattacharya, ...
Scientific reports 8 (1), 9939, 2018
232018
Identification and localization of Tospovirus genus-wide conserved residues in 3D models of the nucleocapsid and the silencing suppressor proteins
C Olaya, B Adhikari, G Raikhy, J Cheng, HR Pappu
Virology journal 16 (1), 7, 2019
212019
Protein contact prediction by integrating deep multiple sequence alignments, coevolution and machine learning
B Adhikari, J Hou, J Cheng
Proteins: Structure, Function, and Bioinformatics 86, 84-96, 2018
212018
The system can't perform the operation now. Try again later.
Articles 1–20