| The MG-RAST metagenomics database and portal in 2015 A Wilke, J Bischof, W Gerlach, E Glass, T Harrison, KP Keegan, T Paczian, ... Nucleic acids research 44 (D1), D590-D594, 2016 | 219 | 2016 |
| Identification of differentially expressed microRNAs in osteosarcoma RR Lulla, FF Costa, JM Bischof, PM Chou, MF Bonaldo, EF Vanin, ... Sarcoma 2011, 2011 | 163 | 2011 |
| Skyport-container-based execution environment management for multi-cloud scientific workflows W Gerlach, W Tang, K Keegan, T Harrison, A Wilke, J Bischof, M D'Souza, ... 2014 5th International Workshop on Data-Intensive Computing in the Clouds, 25-32, 2014 | 133 | 2014 |
| Identification of microRNAs as potential prognostic markers in ependymoma FF Costa, JM Bischof, EF Vanin, RR Lulla, M Wang, ST Sredni, V Rajaram, ... PloS one 6 (10), e25114, 2011 | 129 | 2011 |
| Folic acid remodels chromatin on Hes1 and Neurog2 promoters during caudal neural tube development S Ichi, FF Costa, JM Bischof, H Nakazaki, YW Shen, V Boshnjaku, ... Journal of Biological Chemistry 285 (47), 36922-36932, 2010 | 111 | 2010 |
| Genome‐wide identification of pseudogenes capable of disease‐causing gene conversion JM Bischof, AP Chiang, TE Scheetz, EM Stone, TL Casavant, VC Sheffield, ... Human mutation 27 (6), 545-552, 2006 | 98 | 2006 |
| Epigenetically reprogramming metastatic tumor cells with an embryonic microenvironment FF Costa, EA Seftor, JM Bischof, DA Kirschmann, L Strizzi, K Arndt, ... Epigenomics 1 (2), 387-398, 2009 | 91 | 2009 |
| A RESTful API for accessing microbial community data for MG-RAST A Wilke, J Bischof, T Harrison, T Brettin, M D'Souza, W Gerlach, ... PLoS computational biology 11 (1), e1004008, 2015 | 86 | 2015 |
| The commonality of plasticity underlying multipotent tumor cells and embryonic stem cells LM Postovit, FF Costa, JM Bischof, EA Seftor, B Wen, REB Seftor, ... Journal of cellular biochemistry 101 (4), 908-917, 2007 | 73 | 2007 |
| Global demethylation of rat chondrosarcoma cells after treatment with 5-aza-2′-deoxycytidine results in increased tumorigenicity CA Hamm, H Xie, FF Costa, EF Vanin, EA Seftor, ST Sredni, J Bischof, ... PLoS One 4 (12), e8340, 2009 | 71 | 2009 |
| Epigenetic reprogramming as a key contributor to melanocyte malignant transformation F Molognoni, AT Cruz, FM Meliso, AS Morais, CF Souza, P Xander, ... Epigenetics 6 (4), 450-464, 2011 | 48 | 2011 |
| Transcriptional profiling of polycythemia vera identifies gene expression patterns both dependent and independent from the action of JAK2V617F W Berkofsky-Fessler, M Buzzai, MKH Kim, S Fruchtman, V Najfeld, DJ Min, ... Clinical cancer research 16 (17), 4339-4352, 2010 | 41 | 2010 |
| Upregulation of mir-221 and mir-222 in atypical teratoid/rhabdoid tumors: potential therapeutic targets ST Sredni, MF Bonaldo, FF Costa, CC Huang, CA Hamm, V Rajaram, ... Child's Nervous System 26, 279-283, 2010 | 41 | 2010 |
| Microenvironment alters epigenetic and gene expression profiles in Swarm rat chondrosarcoma tumors CA Hamm, JW Stevens, H Xie, EF Vanin, JA Morcuende, H Abdulkawy, ... BMC cancer 10, 1-16, 2010 | 39 | 2010 |
| Expression of miR-18a and miR-210 in Normal Breast Tissue as Candidate Biomarkers of Breast Cancer Risk A Shidfar, FF Costa, D Scholtens, JM Bischof, ME Sullivan, DZ Ivancic, ... Cancer Prevention Research 10 (1), 89-97, 2017 | 37 | 2017 |
| Parallel creation of non-redundant gene indices from partial mRNA transcripts N Trivedi, J Bischof, S Davis, K Pedretti, TE Scheetz, TA Braun, ... Future Generation Computer Systems 18 (6), 863-870, 2002 | 32 | 2002 |
| High-throughput gene discovery in the rat TE Scheetz, JJ Laffin, B Berger, S Holte, SA Baumes, R Brown, S Chang, ... Genome research 14 (4), 733-741, 2004 | 26 | 2004 |
| A genome-wide analysis of open chromatin in human tracheal epithelial cells reveals novel candidate regulatory elements for lung function JM Bischof, CJ Ott, SH Leir, N Gosalia, L Song, D London, TS Furey, ... Thorax 67 (5), 385-391, 2012 | 25 | 2012 |
| Multiple mechanisms influence regulation of the cystic fibrosis transmembrane conductance regulator gene promoter MA Lewandowska, FF Costa, JM Bischof, SH Williams, MB Soares, ... American journal of respiratory cell and molecular biology 43 (3), 334-341, 2010 | 25 | 2010 |
| A genome-wide analysis of open chromatin in human epididymis epithelial cells reveals candidate regulatory elements for genes coordinating epididymal function JM Bischof, AE Gillen, L Song, N Gosalia, D London, TS Furey, ... Biology of reproduction 89 (4), 104, 1-8, 2013 | 23 | 2013 |
