Antonín Pavelka
Antonín Pavelka
Verified email at fi.muni.cz
Title
Cited by
Cited by
Year
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures
E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ...
PLoS Comput Biol 8 (10), e1002708, 2012
6942012
PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations
J Bendl, J Stourac, O Salanda, A Pavelka, ED Wieben, J Zendulka, ...
PLoS Comput Biol 10 (1), e1003440, 2014
3852014
HotSpot Wizard: a web server for identification of hot spots in protein engineering
A Pavelka, E Chovancova, J Damborsky
Nucleic acids research 37 (suppl_2), W376-W383, 2009
1752009
Haloalkane dehalogenases: biotechnological applications
T Koudelakova, S Bidmanova, P Dvorak, A Pavelka, R Chaloupkova, ...
Biotechnology Journal 8 (1), 32-45, 2013
1392013
CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures
B Kozlikova, E Sebestova, V Sustr, J Brezovsky, O Strnad, L Daniel, ...
Bioinformatics 30 (18), 2684-2685, 2014
1352014
Software tools for identification, visualization and analysis of protein tunnels and channels
J Brezovsky, E Chovancova, A Gora, A Pavelka, L Biedermannova, ...
Biotechnology advances 31 (1), 38-49, 2013
762013
CAVER: algorithms for analyzing dynamics of tunnels in macromolecules
A Pavelka, E Sebestova, B Kozlikova, J Brezovsky, J Sochor, ...
IEEE/ACM transactions on computational biology and bioinformatics 13 (3 …, 2015
642015
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories
A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ...
Bioinformatics 34 (20), 3586-3588, 2018
622018
MMTF—An efficient file format for the transmission, visualization, and analysis of macromolecular structures
AR Bradley, AS Rose, A Pavelka, Y Valasatava, JM Duarte, A Prlić, ...
PLoS computational biology 13 (6), e1005575, 2017
302017
Expansion of access tunnels and active-site cavities influence activity of haloalkane dehalogenases in organic cosolvents
V Štěpánková
HALOALKANE DEHALOGENASES IN NON-CONVENTIONAL REACTION MEDIA 14 (7), 79, 2013
242013
Bioinformatics tools for the analysis of macromolecular structures
A Pavelka
Masarykova univerzita, Fakulta informatiky, 2016
12016
Scalable data analytics of the PDB with the MacroMolecular Transmission Format (MMTF) and big data technologies
PW Rose, AR Bradley, JM Duarte, A Pavelka, A Prlic, AS Rose, ...
F1000Research 6, 2017
2017
CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures
E Šebestová, A Pavelka, P Beneš, O Strnad, J Brezovský, B Kozlíková, ...
2012
Development of geometrical methods for protein engineering and analysis of protein structures
A Pavelka
Masarykova univerzita, Fakulta informatiky, 2012
2012
CAVER 3.0
E Chovancová, A Pavelka, P Beneš, O Strnad, J Brezovský, B Kozlíková, ...
2011
Polymorfizmus CYP2D6 a vliv jednotlivých mutací na fenotypickou konverzi při léčbě paroxetinem
I Palčíková, A Žourková, A Pavelka, E Pindurová, J Juřica
2011
Paroxetine Metabolization and Cytochrome P450 2D6: Towards Predictive Models.
I Palčíková, A Žourková, A Pavelka, E Pindurová, J Juřica
2011
Prediktivní modely rychlosti metaboloizace CYP2D6 u uživatelů paroxetinu
I Palčíková, A Žourková, A Pavelka, E Pindurová, J Juřica
Guarant international, 2011
2011
HOTSPOT WIZARD: WEB APPLICATION FOR PROTEIN ENGINEERING AND STRUCTURAL ANNOTATION
A Pavelka, E Šebestová, J Damborský
2011
CAVER 3.0: A Tool For Efficient Analysis Of Tunnels In Dynamic Protein Structures
E Šebestová, P Beneš, A Pavelka, P Medek, J Brezovský, B Kozlíková, ...
2011
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Articles 1–20