Ana Paula Oliveira
Ana Paula Oliveira
ETH Zurich (former post-doc)
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A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology
MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ...
Nature biotechnology 26 (10), 1155-1160, 2008
Global analysis of protein structural changes in complex proteomes
Y Feng, G De Franceschi, A Kahraman, M Soste, A Melnik, PJ Boersema, ...
Nature biotechnology 32 (10), 1036-1044, 2014
Modeling Lactococcus lactis using a genome-scale flux model
A Oliveira, J Nielsen, J Förster
BMC microbiology 5 (1), 39, 2005
Regulation of yeast central metabolism by enzyme phosphorylation
AP Oliveira, C Ludwig, P Picotti, M Kogadeeva, R Aebersold, U Sauer
Molecular Systems Biology 8 (1), 2012
Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks
A Oliveira, K Patil, J Nielsen
BMC systems biology 2 (1), 17, 2008
The importance of post‐translational modifications in regulating Saccharomyces cerevisiae metabolism
AP Oliveira, U Sauer
FEMS yeast research 12 (2), 104-117, 2012
Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator
R Usaite, MC Jewett, AP Oliveira, JR Yates, L Olsson, J Nielsen
Molecular systems biology 5 (1), 2009
A systems biology approach to study glucose repression in the yeast Saccharomyces cerevisiae
SL Westergaard, AP Oliveira, C Bro, L Olsson, J Nielsen
Biotechnology and bioengineering 96 (1), 134-145, 2007
Unraveling condition-dependent networks of transcription factors that control metabolic pathway activity in yeast
SM Fendt, AP Oliveira, S Christen, P Picotti, RC Dechant, U Sauer
Molecular Systems Biology 6 (1), 2010
Reconstruction and logical modeling of glucose repression signaling pathways in Saccharomyces cerevisiae
T Christensen, A Oliveira, J Nielsen
BMC systems biology 3 (1), 7, 2009
Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans
H David, G Hofmann, AP Oliveira, H Jarmer, J Nielsen
Genome biology 7 (11), R108, 2006
Dynamic phosphoproteomics reveals TORC1-dependent regulation of yeast nucleotide and amino acid biosynthesis
AP Oliveira, C Ludwig, M Zampieri, H Weisser, R Aebersold, U Sauer
Science Signaling 8 (374), rs4, 2015
Model Microbial Communities for Ecosystems Biology
S Blasche, Y Kim, AP Oliveira, KR Patil
Current Opinion in Systems Biology, 2017
Inferring causal metabolic signals that regulate the dynamic TORC1‐dependent transcriptome
AP Oliveira, S Dimopoulos, AG Busetto, S Christen, R Dechant, L Falter, ...
Molecular systems biology 11 (4), 802, 2015
The role of high-throughput transcriptome analysis in metabolic engineering
MC Jewett, AP Oliveira, KR Patil, J Nielsen
Biotechnology and Bioprocess Engineering 10 (5), 385-399, 2005
Elucidation of Genetic Interactions in the Yeast GATA-Factor Network Using Bayesian Model Selection
A Milias-Argeitis, AP Oliveira, L Gerosa, L Falter, U Sauer, J Lygeros
PLOS Comput Biol 12 (3), e1004784, 2016
From Gene Expression to Metabolic Fluxes
AP Oliveira, MC Jewett, J Nielsen
Introduction to Systems Biology, 37-66, 2007
Towards Enhancing Metabolic Engineering Through Systems Biology: PhD Thesis
AP Oliveira
Department of Systems Biology, Technical University of Denmark, 2008
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