| Minimum information about a microarray experiment (MIAME)—toward standards for microarray data A Brazma, P Hingamp, J Quackenbush, G Sherlock, P Spellman, ... Nature genetics 29 (4), 365-371, 2001 | 4501 | 2001 |
| ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap T Metsalu, J Vilo Nucleic acids research 43 (W1), W566-W570, 2015 | 1301 | 2015 |
| ArrayExpress—a public repository for microarray gene expression data at the EBI A Brazma, H Parkinson, U Sarkans, M Shojatalab, J Vilo, ... Nucleic acids research 31 (1), 68-71, 2003 | 1015 | 2003 |
| g: Profiler—a web server for functional interpretation of gene lists (2016 update) J Reimand, T Arak, P Adler, L Kolberg, S Reisberg, H Peterson, J Vilo Nucleic acids research, gkw199, 2016 | 896 | 2016 |
| g: Profiler—a web-based toolset for functional profiling of gene lists from large-scale experiments J Reimand, M Kull, H Peterson, J Hansen, J Vilo Nucleic acids research 35 (suppl_2), W193-W200, 2007 | 831 | 2007 |
| Gene expression data analysis A Brazma, J Vilo FEBS letters 480 (1), 17-24, 2000 | 826 | 2000 |
| g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update) U Raudvere, L Kolberg, I Kuzmin, T Arak, P Adler, H Peterson, J Vilo Nucleic acids research 47 (W1), W191-W198, 2019 | 728 | 2019 |
| g: Profiler—a web server for functional interpretation of gene lists (2011 update) J Reimand, T Arak, J Vilo Nucleic acids research 39 (suppl_2), W307-W315, 2011 | 511 | 2011 |
| A first-generation linkage disequilibrium map of human chromosome 22 E Dawson, GR Abecasis, S Bumpstead, Y Chen, S Hunt, DM Beare, ... Nature 418 (6897), 544-548, 2002 | 506 | 2002 |
| Robust rank aggregation for gene list integration and meta-analysis R Kolde, S Laur, P Adler, J Vilo Bioinformatics 28 (4), 573-580, 2012 | 467 | 2012 |
| Predicting gene regulatory elements in silico on a genomic scale A Brāzma, I Jonassen, J Vilo, E Ukkonen Genome research 8 (11), 1202-1215, 1998 | 466 | 1998 |
| DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns K Lokk, V Modhukur, B Rajashekar, K Märtens, R Mägi, R Kolde, ... Genome biology 15 (4), 1-14, 2014 | 274 | 2014 |
| Protein interaction verification and functional annotation by integrated analysis of genome-scale data P Kemmeren, NL van Berkum, J Vilo, T Bijma, R Donders, A Brazma, ... Molecular cell 9 (5), 1133-1143, 2002 | 261 | 2002 |
| Meta‐analysis of microRNA expression in lung cancer U Vosa, T Vooder, R Kolde, J Vilo, A Metspalu, T Annilo International journal of cancer 132 (12), 2884-2893, 2013 | 221 | 2013 |
| Human embryonic stem cell-derived test systems for developmental neurotoxicity: a transcriptomics approach AK Krug, R Kolde, JA Gaspar, E Rempel, NV Balmer, K Meganathan, ... Archives of Toxicology, 1-21, 2012 | 197 | 2012 |
| Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods P Adler, R Kolde, M Kull, A Tkachenko, H Peterson, J Reimand, J Vilo Genome biology 10 (12), 1-11, 2009 | 154 | 2009 |
| MicroRNA expression profiles of human blood monocyte-derived dendritic cells and macrophages reveal miR-511 as putative positive regulator of Toll-like receptor 4 L Tserel, T Runnel, K Kisand, M Pihlap, L Bakhoff, R Kolde, H Peterson, ... Journal of Biological Chemistry 286 (30), 26487-26495, 2011 | 149 | 2011 |
| Expression Profiler: next generation—an online platform for analysis of microarray data M Kapushesky, P Kemmeren, AC Culhane, S Durinck, J Ihmels, C Körner, ... Nucleic acids research 32 (suppl_2), W465-W470, 2004 | 148 | 2004 |
| Mining for putative regulatory elements in the yeast genome using gene expression data. J Vilo, A Brazma, I Jonassen, AJ Robinson, E Ukkonen Ismb 2000, 384-394, 2000 | 138 | 2000 |
| Identification of miR‐374a as a prognostic marker for survival in patients with early‐stage nonsmall cell lung cancer U Võsa, T Vooder, R Kolde, K Fischer, K Välk, N Tõnisson, R Roosipuu, ... Genes, Chromosomes and Cancer 50 (10), 812-822, 2011 | 137 | 2011 |
Alvis BrazmaSenior Scientist, European Bioinformatics Institute, EMBLVerified email at ebi.ac.uk
