James Jeffryes
James Jeffryes
Postdoctoral Researcher, Argonne National Laboratory
Verified email at mcs.anl.gov - Homepage
Title
Cited by
Cited by
Year
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics
JG Jeffryes, RL Colastani, M Elbadawi-Sidhu, T Kind, TD Niehaus, ...
Journal of cheminformatics 7 (1), 1-8, 2015
1612015
‘Nothing of chemistry disappears in biology’: the Top 30 damage-prone endogenous metabolites
C Lerma-Ortiz, JG Jeffryes, AJL Cooper, TD Niehaus, AMK Thamm, ...
Biochemical Society Transactions 44 (3), 961-971, 2016
632016
Metabolite damage and repair in metabolic engineering design
J Sun, JG Jeffryes, CS Henry, SD Bruner, AD Hanson
Metabolic engineering 44, 150-159, 2017
382017
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ...
Nucleic acids research 49 (D1), D575-D588, 2021
322021
A directed-overflow and damage-control N-glycosidase in riboflavin biosynthesis
O Frelin, L Huang, G Hasnain, JG Jeffryes, MJ Ziemak, JR Rocca, B Wang, ...
Biochemical Journal 466 (1), 137-145, 2015
322015
Predicting novel substrates for enzymes with minimal experimental effort with active learning
DA Pertusi, ME Moura, JG Jeffryes, S Prabhu, BW Biggs, KEJ Tyo
Metabolic engineering 44, 171-181, 2017
222017
A pathway for every product? Tools to discover and design plant metabolism
JG Jeffryes, SMD Seaver, JP Faria, CS Henry
Plant Science 273, 61-70, 2018
152018
The ModelSEED Database for the integration of metabolic annotations and the reconstruction, comparison, and analysis of metabolic models for plants, fungi, and microbes
SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ...
bioRxiv, 2020
22020
Metabolic in silico network expansions to predict and exploit enzyme promiscuity
J Jeffryes, J Strutz, C Henry, KEJ Tyo
Microbial Metabolic Engineering, 11-21, 2019
12019
Improving automated model reconstruction across phylogenetically diverse genome-scale metabolic models
JP Faria, JN Edirisinghe, S Seaver, FAW Liu, P Weisenhorn, JG Jeffryes, ...
2018
Automated pathway curation and improving metabolic model reconstruction based on phylogenetic analysis of pathway conservation
JN Edirisinghe, J Faria, FAW Liu, JRC Xavier, S Seaver, P Weisenhorn, ...
2017
Detection of novel metabolites and enzyme functions through in silico expansion of metabolic models
J Jeffryes, C Lerma-Ortiz, A Cooper, T Niehaus, A Thamm, O Frelin, ...
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
Understanding and exploiting enzyme promiscuity for metabolic engineering
D Pertusi, J Jeffryes, K Tyo
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
Genome to Structure: From Multiple Sequence Alignment to Virtual Ligand Screening Using Co-Evolutionary Protein-Residue Contact-Prediction in KBase
A Sedova, JG Jeffryes, L Petridis, BH Davison, CS Henry, J Mitchell
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Articles 1–14