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Substitution mutational signatures in whole-genome–sequenced cancers in the UK population A Degasperi, X Zou, T Dias Amarante, A Martinez-Martinez, GCC Koh, ... Science 376 (6591), abl9283, 2022 | 128 | 2022 |
A systematic CRISPR screen defines mutational mechanisms underpinning signatures caused by replication errors and endogenous DNA damage X Zou, GCC Koh, AS Nanda, A Degasperi, K Urgo, TI Roumeliotis, ... Nature cancer 2 (6), 643-657, 2021 | 99 | 2021 |
Genome-wide plasma DNA methylation features of metastatic prostate cancer A Wu, P Cremaschi, D Wetterskog, V Conteduca, GM Franceschini, ... The Journal of clinical investigation 130 (4), 1991-2000, 2020 | 77 | 2020 |
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A novel method to discover fluoroquinolone antibiotic resistance (qnr) genes in fragmented nucleotide sequences F Boulund, A Johnning, MB Pereira, DGJ Larsson, E Kristiansson BMC genomics 13, 1-9, 2012 | 43 | 2012 |
Spectrum of mutational signatures in T-cell lymphoma reveals a key role for UV radiation in cutaneous T-cell lymphoma CL Jones, A Degasperi, V Grandi, TD Amarante, TJ Mitchell, S Nik-Zainal, ... Scientific reports 11 (1), 3962, 2021 | 42 | 2021 |
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A comprehensive survey of integron-associated genes present in metagenomes M Buongermino Pereira, T Österlund, KM Eriksson, T Backhaus, ... BMC genomics 21, 1-14, 2020 | 31 | 2020 |
The resistomes of six carbapenem-resistant pathogens–a critical genotype–phenotype analysis A Johnning, N Karami, E Tång Hallbäck, V Müller, L Nyberg, ... Microbial genomics 4 (11), e000233, 2018 | 27 | 2018 |
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Accurate and Sensitive Analysis of Minimal Residual Disease in Acute Myeloid Leukemia Using Deep Sequencing of Single Nucleotide Variations ED Malmberg, A Rehammar, MB Pereira, J Abrahamsson, T Samuelsson, ... The Journal of Molecular Diagnostics 21 (1), 149-162, 2019 | 24 | 2019 |
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HattCI: Fast and Accurate attC site Identification Using Hidden Markov Models MB Pereira, M Wallroth, E Kristiansson, M Axelson-Fisk Journal of Computational Biology 23 (11), 891-902, 2016 | 20 | 2016 |
SOX11 variants cause a neurodevelopmental disorder with infrequent ocular malformations and hypogonadotropic hypogonadism and with distinct DNA methylation profile R Al-Jawahiri, A Foroutan, J Kerkhof, H McConkey, M Levy, ... Genetics in medicine 24 (6), 1261-1273, 2022 | 19 | 2022 |
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