Fedor Kolpakov
Fedor Kolpakov
Biosoft.Ru
Verified email at biosoft.ru
Title
Cited by
Cited by
Year
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL
T Heinemeyer, E Wingender, I Reuter, H Hermjakob, AE Kel, OV Kel, ...
Nucleic acids research 26 (1), 362-367, 1998
17641998
The systems biology graphical notation
N Le Novere, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735-741, 2009
8842009
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ...
Nucleic acids research 46 (D1), D252-D259, 2018
2982018
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language
D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ...
BMC systems biology 5 (1), 1-10, 2011
2222011
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ...
Nucleic acids research 44 (D1), D116-D125, 2016
1832016
GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments
I Yevshin, R Sharipov, T Valeev, A Kel, F Kolpakov
Nucleic acids research, gkw951, 2016
1472016
GeneNet: a gene network database and its automated visualization.
FA Kolpakov, EA Ananko, GB Kolesov, NA Kolchanov
Bioinformatics (Oxford, England) 14 (6), 529-537, 1998
1311998
GTRD: a database on gene transcription regulation—2019 update
I Yevshin, R Sharipov, S Kolmykov, Y Kondrakhin, F Kolpakov
Nucleic acids research 47 (D1), D100-D105, 2019
982019
Transcription regulatory regions database (TRRD): its status in 2000
NA Kolchanov, OA Podkolodnaya, EA Ananko, EV Ignatieva, ...
Nucleic Acids Research 28 (1), 298-301, 2000
812000
Gene networks
NA Kolchanov, EA Anan’ko, FA Kolpakov, OA Podkolodnaya, ...
Molecular Biology 34 (4), 449-460, 2000
712000
Transcription regulatory regions database (TRRD): its status in 1999
NA Kolchanov, EA Ananko, OA Podkolodnaya, EV Ignatieva, ...
Nucleic acids research 27 (1), 303-306, 1999
441999
BioUML-Framework for visual modeling and simulation of biological systems
FA Kolpakov
Proceedings of the International Conference on Bioinformatics of Genome …, 2002
402002
TRRD: database on transcription regulatory regions of eukaryotic genes
AE Kel', NA Kolchanov, OV Kel', AG Romashchenko, EA Anan'Ko, ...
Molecular Biology 31 (4), 521-530, 1997
331997
Integrated databases and computer systems for studying eukaryotic gene expression.
NA Kolchanov, MP Ponomarenko, AS Frolov, EA Ananko, FA Kolpakov, ...
Bioinformatics (Oxford, England) 15 (7), 669-686, 1999
301999
BioUML: visual modeling, automated code generation and simulation of biological systems
F Kolpakov, M Puzanov, A Koshukov
Proceedings of The Fifth International Conference on Bioinformatics of …, 2006
292006
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
262020
Interactive data input into the GeneNet database.
FA Kolpakov, EA Ananko
Bioinformatics (Oxford, England) 15 (7), 713-714, 1999
261999
GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.
NA Kolchanov, MP Ponomarenko, AE Kel, YV Kondrakhin, AS Frolov, ...
ISMB 6, 95-104, 1998
241998
BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data
F Kolpakov, I Akberdin, T Kashapov, llya Kiselev, S Kolmykov, ...
Nucleic acids research 47 (W1), W225-W233, 2019
232019
CYCLONET—an integrated database on cell cycle regulation and carcinogenesis
F Kolpakov, V Poroikov, R Sharipov, Y Kondrakhin, A Zakharov, ...
Nucleic acids research 35 (suppl_1), D550-D556, 2007
212007
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