Fedor Kolpakov
Fedor Kolpakov
Biosoft.Ru
Verified email at biosoft.ru
Title
Cited by
Cited by
Year
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL
T Heinemeyer, E Wingender, I Reuter, H Hermjakob, AE Kel, OV Kel, ...
Nucleic acids research 26 (1), 362-367, 1998
17291998
The systems biology graphical notation
N Le Novere, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ...
Nature biotechnology 27 (8), 735-741, 2009
8692009
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis
IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ...
Nucleic acids research 46 (D1), D252-D259, 2018
2722018
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language
D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ...
BMC systems biology 5 (1), 1-10, 2011
2192011
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ...
Nucleic acids research 44 (D1), D116-D125, 2016
1772016
GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments
I Yevshin, R Sharipov, T Valeev, A Kel, F Kolpakov
Nucleic acids research, gkw951, 2016
1422016
GeneNet: a gene network database and its automated visualization.
FA Kolpakov, EA Ananko, GB Kolesov, NA Kolchanov
Bioinformatics (Oxford, England) 14 (6), 529-537, 1998
1311998
GTRD: a database on gene transcription regulation—2019 update
I Yevshin, R Sharipov, S Kolmykov, Y Kondrakhin, F Kolpakov
Nucleic acids research 47 (D1), D100-D105, 2019
882019
Transcription regulatory regions database (TRRD): its status in 2000
NA Kolchanov, OA Podkolodnaya, EA Ananko, EV Ignatieva, ...
Nucleic Acids Research 28 (1), 298-301, 2000
802000
Gene networks
NA Kolchanov, EA Anan’ko, FA Kolpakov, OA Podkolodnaya, ...
Molecular Biology 34 (4), 449-460, 2000
692000
Transcription regulatory regions database (TRRD): its status in 1999
NA Kolchanov, EA Ananko, OA Podkolodnaya, EV Ignatieva, ...
Nucleic acids research 27 (1), 303-306, 1999
431999
BioUML-Framework for visual modeling and simulation of biological systems
FA Kolpakov
Proceedings of the International Conference on Bioinformatics of Genome …, 2002
402002
TRRD: database on transcription regulatory regions of eukaryotic genes
AE Kel', NA Kolchanov, OV Kel', AG Romashchenko, EA Anan'Ko, ...
Molecular Biology 31 (4), 521-530, 1997
321997
BioUML: visual modeling, automated code generation and simulation of biological systems
F Kolpakov, M Puzanov, A Koshukov
Proceedings of The Fifth International Conference on Bioinformatics of …, 2006
292006
Integrated databases and computer systems for studying eukaryotic gene expression.
NA Kolchanov, MP Ponomarenko, AS Frolov, EA Ananko, FA Kolpakov, ...
Bioinformatics (Oxford, England) 15 (7), 669-686, 1999
291999
Interactive data input into the GeneNet database.
FA Kolpakov, EA Ananko
Bioinformatics (Oxford, England) 15 (7), 713-714, 1999
261999
GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.
NA Kolchanov, MP Ponomarenko, AE Kel, YV Kondrakhin, AS Frolov, ...
ISMB 6, 95-104, 1998
241998
BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data
F Kolpakov, I Akberdin, T Kashapov, llya Kiselev, S Kolmykov, ...
Nucleic acids research 47 (W1), W225-W233, 2019
232019
CYCLONET—an integrated database on cell cycle regulation and carcinogenesis
F Kolpakov, V Poroikov, R Sharipov, Y Kondrakhin, A Zakharov, ...
Nucleic acids research 35 (suppl_1), D550-D556, 2007
212007
Transcriptome characteristics and X-chromosome inactivation status in cultured rat pluripotent stem cells
EA Vaskova, SP Medvedev, AE Sorokina, AA Nemudryy, EA Elisaphenko, ...
Stem cells and development 24 (24), 2912-2924, 2015
182015
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