Swagatika Sahoo

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Ines ThieleNational University of Ireland, GalwayVerified email at nuigalway.ie
Ronan M.T. FlemingSenior Lecturer, National University of Ireland, Galway, & Asst. Professor, Leiden UniversityVerified email at lacdr.leidenuniv.nl
Almut HeinkenNational University of Ireland, GalwayVerified email at nuigalway.ie
Alberto NoronhaResearch Associate, Luxembourg Centre for Systems Biomedicine (LCSB)Verified email at uni.lu
Andreas DrägerJunior Professor for Computational Systems Biology of Infection and Antimicrobial-ResistanceVerified email at informatik.uni-tuebingen.de
Nathan MihVerified email at eng.ucsd.edu
Elizabeth BrunkAssistant Professor at UNC Chapel HillVerified email at med.unc.edu
Daniel C. ZielinskiProject Scientist, University of California San DiegoVerified email at ucsd.edu
Avlant NilssonMassachusetts Institute of TechnologyVerified email at mit.edu
Francesco GattoChalmers University of TechnologyVerified email at chalmers.se
Andreas PrlicUCSD / SDSCVerified email at sdsc.edu
Stephen K. Burley, M.D., D.Phil.Institute for Quantitative Biomedicine, Rutgers UniversityVerified email at proteomics.rutgers.edu
Peter W. RoseUniversity of California San DiegoVerified email at ucsd.edu
Anand V SastryGraduate Student in Bioengineering, UC San DiegoVerified email at eng.ucsd.edu
Bernhard PalssonUCSDVerified email at eng.ucsd.edu
Jens NielsenProfessor in Systems Biology, Chalmers University of Technology, SwedenVerified email at chalmers.se
Laurent HeirendtUniversity of Luxembourg, Luxembourg Centre for Systems BiomedicineVerified email at uni.lu
Hulda S. HaraldsdóttirPostdoc in the Systems Biochemistry Group, Luxembourg Centre for Systems Biomedicine, University of LuxembourgVerified email at uni.lu
Raghunathan RengaswamyProfessor of Chemical Engineering, IIT MadrasVerified email at iitm.ac.in
Gk SuraishkumarVerified email at iitm.ac.in

Swagatika Sahoo

Indian Institute of Technology Madras

Verified email at iitm.ac.in

Systems biology constraint-based metabolic modeling biochemistry human metabolism metabolic disorders


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A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013	977	2013
Recon3D enables a three-dimensional view of gene variation in human metabolism E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Dräger, N Mih, F Gatto, ... Nature biotechnology 36 (3), 272, 2018	247	2018
Systems-level characterization of a host-microbe metabolic symbiosis in the mammalian gut A Heinken, S Sahoo, RMT Fleming, I Thiele Gut microbes 4 (1), 28-40, 2013	195	2013
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ... Nucleic acids research 47 (D1), D614-D624, 2019	108	2019
A compendium of inborn errors of metabolism mapped onto the human metabolic network S Sahoo, L Franzson, JJ Jonsson, I Thiele Molecular BioSystems 8 (10), 2545-2558, 2012	79	2012
Membrane transporters in a human genome-scale metabolic knowledgebase and their implications for disease S Sahoo, MK Aurich, JJ Jonsson, I Thiele Frontiers in physiology 5, 91, 2014	64	2014
Predicting the impact of diet and enzymopathies on human small intestinal epithelial cells S Sahoo, I Thiele Human molecular genetics 22 (13), 2705-2722, 2013	61	2013
Modeling the effects of commonly used drugs on human metabolism S Sahoo, HS Haraldsdóttir, RMT Fleming, I Thiele The FEBS journal 282 (2), 297-317, 2015	33	2015
Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome I Thiele, S Sahoo, A Heinken, J Hertel, L Heirendt, MK Aurich, ... Molecular systems biology 16 (5), e8982, 2020	27	2020
When metabolism meets physiology: Harvey and Harvetta I Thiele, S Sahoo, A Heinken, L Heirendt, MK Aurich, A Noronha, ... BioRxiv, 255885, 2018	13	2018
Recon3D: A Resource Enabling A Three-Dimensional View of Gene Variation in Human Metabolism E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Draeger, N Mih, F Gatto, ... Nat Biotech,(Accepted), 2017	10	2017
Metabolite systems profiling identifies exploitable weaknesses in retinoblastoma S Sahoo, RK Ravi Kumar, B Nicolay, O Mohite, K Sivaraman, V Khetan, ... FEBS letters 593 (1), 23-41, 2019	2	2019
Recon 3D: A resource enabling a three-dimensional view of human metabolism and disease E Brunk, S Sahoo, D Zielinski, A Altunkaya, N Mih, A Prlic, A Sastry, ... Abstracts of Papers of the American Chemical Society 253, 2017	2	2017
Mechanism of the oxidative stress‐mediated increase in lipid accumulation by the bacterium, R. opacus PD630: Experimental analysis and genome‐scale … A Sundararaghavan, A Mukherjee, S Sahoo, GK Suraishkumar Biotechnology and bioengineering 117 (6), 1779-1788, 2020	1	2020
Silver nanoparticle induced oxidative stress augments anticancer gut bacterial metabolites production P Bhalla, R Rengaswamy, D Karunagaran, GK Suraishkumar, S Sahoo BioRxiv, 658609, 2019	1	2019
Computational framework for exploring the interplay of diet and gut microbiota in autism MV Palukuri, S Shivakumar, S Sahoo, R Rengaswamy BioRxiv, 422931, 2018	1	2018
Systems biology of inborn errors of metabolism S Sahoo	1	2013
HMG Advance Access published March 13, 2013 S Sahoo, I Thiele		2013
Estimation of metabolite concentration ranges in human cells inflicted with inborn errors of metabolism: P24-26 H Haraldsdottir, S Sahoo, L Franzson, J Jónsson, I Thiele, R Fleming The Febs Journal 279, 525-526, 2012		2012
DNA damage in exfoliated buccal cells and antioxidant status of saliva in brain tumour patients RP Shenoy, A Vatsa, S Sahoo, R Rana, G Nayak, P Bhat, G Kalthur, ... 海南醫學院學報 16 (10), 1269-1274, 2010		2010

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