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Evangelos Pafilis
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The environment ontology in 2016: bridging domains with increased scope, semantic density, and interoperation
PL Buttigieg, E Pafilis, SE Lewis, MP Schildhauer, RL Walls, CJ Mungall
Journal of biomedical semantics 7 (1), 1-12, 2016
1652016
The SPECIES and ORGANISMS resources for fast and accurate identification of taxonomic names in text
E Pafilis, SP Frankild, L Fanini, S Faulwetter, C Pavloudi, A Vasileiadou, ...
PloS one 8 (6), e65390, 2013
1402013
Arena3D: visualization of biological networks in 3D
GA Pavlopoulos, SI O'Donoghue, VP Satagopam, TG Soldatos, E Pafilis, ...
BMC systems biology 2 (1), 1-7, 2008
1272008
Reflect: augmented browsing for the life scientist
E Pafilis, S O'Donoghue, L Jensen, H Horn, M Kuhn, N Brown, ...
Nature Precedings, 1-1, 2009
1182009
Polytraits: A database on biological traits of marine polychaetes
MS Faulwetter, MV Markantonatou, MC Pavloudi, N Papageorgiou, ...
Biodiversity data journal, 2014
812014
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows
T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ...
Journal of biomedical semantics 1 (1), 1-19, 2010
532010
The founding charter of the Genomic Observatories Network
N Davies, D Field, L Amaral-Zettler, MS Clark, J Deck, A Drummond, ...
GigaScience 3 (1), 1-5, 2014
422014
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation
E Pafilis, PL Buttigieg, B Ferrell, E Pereira, J Schnetzer, C Arvanitidis, ...
Database 2016, 2016
382016
Overview of the interactive task in BioCreative V
Q Wang, S S Abdul, L Almeida, S Ananiadou, YI Balderas-Martínez, ...
Database 2016, 2016
372016
Experience using web services for biological sequence analysis
H Stockinger, T Attwood, SN Chohan, R Côté, P Cudré-Mauroux, ...
Briefings in bioinformatics 9 (6), 493-505, 2008
342008
PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes
H Zafeiropoulos, HQ Viet, K Vasileiadou, A Potirakis, C Arvanitidis, ...
GigaScience 9 (3), giaa022, 2020
322020
Engaging the broader community in biodiversity research: the concept of the COMBER pilot project for divers in ViBRANT
C Arvanitidis, S Faulwetter, G Chatzigeorgiou, L Penev, O Bánki, ...
ZooKeys, 211, 2011
312011
BioTextQuest + : a knowledge integration platform for literature mining and concept discovery
N Papanikolaou, GA Pavlopoulos, E Pafilis, T Theodosiou, R Schneider, ...
Bioinformatics 30 (22), 3249-3256, 2014
292014
Seqenv: linking sequences to environments through text mining
L Sinclair, UZ Ijaz, LJ Jensen, MJL Coolen, C Gubry-Rangin, ...
PeerJ 4, e2690, 2016
282016
ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life
E Pafilis, SP Frankild, J Schnetzer, L Fanini, S Faulwetter, C Pavloudi, ...
Bioinformatics 31 (11), 1872-1874, 2015
252015
Microbiome metadata standards: report of the national microbiome data collaborative’s workshop and follow-on activities
P Vangay, J Burgin, A Johnston, KL Beck, DC Berrios, K Blumberg, ...
Msystems 6 (1), e01194-20, 2021
232021
Beach parties: a case study on recreational human use of the beach and its effects on mobile arthropod fauna
L Fanini, G Zampicinini, E Pafilis
Ethology Ecology & Evolution 26 (1), 69-79, 2014
232014
OnTheFly: a tool for automated document-based text annotation, data linking and network generation
GA Pavlopoulos, E Pafilis, M Kuhn, SD Hooper, R Schneider
Bioinformatics 25 (7), 977-978, 2009
222009
Reflect: A practical approach to web semantics
SI O’Donoghue, H Horn, E Pafilis, S Haag, M Kuhn, VP Satagopam, ...
Web Semantics: Science, Services and Agents on the World Wide Web 8 (2-3 …, 2010
212010
Optimized R functions for analysis of ecological community data using the R virtual laboratory (RvLab)
C Varsos, T Patkos, A Oulas, C Pavloudi, A Gougousis, UZ Ijaz, ...
Biodiversity data journal, 2016
182016
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Articles 1–20