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Fábio Madeira
Fábio Madeira
Technical Project Lead, PhD, EMBL-EBI
Verified email at ebi.ac.uk - Homepage
Title
Cited by
Cited by
Year
UniProt: a worldwide hub of protein knowledge
UniProt Consortium
Nucleic acids research 47 (D1), D506-D515, 2019
62322019
UniProt: the universal protein knowledgebase in 2021
Nucleic acids research 49 (D1), D480-D489, 2021
52162021
The EMBL-EBI search and sequence analysis tools APIs in 2019
F Madeira, YM Park, J Lee, N Buso, T Gur, N Madhusoodanan, ...
Nucleic acids research 47 (W1), W636-W641, 2019
42732019
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
AL Mitchell, TK Attwood, PC Babbitt, M Blum, P Bork, A Bridge, SD Brown, ...
Nucleic acids research 47 (D1), D351-D360, 2019
14522019
UniProt: the universal protein knowledgebase in 2023
Nucleic Acids Research 51 (D1), D523-D531, 2023
13452023
Search and sequence analysis tools services from EMBL-EBI in 2022
F Madeira, M Pearce, ARN Tivey, P Basutkar, J Lee, O Edbali, ...
Nucleic acids research 50 (W1), W276-W279, 2022
11992022
14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides
F Madeira, M Tinti, G Murugesan, E Berrett, M Stafford, R Toth, C Cole, ...
Bioinformatics 31 (14), 2276-2283, 2015
1982015
A crowdsourcing open platform for literature curation in UniProt
Y Wang, Q Wang, H Huang, W Huang, Y Chen, PB McGarvey, CH Wu, ...
PLoS biology 19 (12), e3001464, 2021
1032021
Annotation of biologically relevant ligands in UniProtKB using ChEBI
E Coudert, S Gehant, E de Castro, M Pozzato, D Baratin, T Neto, ...
Bioinformatics 39 (1), btac793, 2023
852023
RN, Potter, SC, Finn, RD, & Lopez, R.(2019). The EMBL-EBI search and sequence analysis tools APIs in 2019
F Madeira, YM Park, J Lee, N Buso, T Gur, N Madhusoodanan, ...
Nucleic acids research 47 (1), 636-641, 0
78
PDBe-KB: a community-driven resource for structural and functional annotations
M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ...
Nucleic Acids Research 48 (D1), D344-D353, 2020
752020
ANIA: ANnotation and Integrated Analysis of the 14-3-3 interactome
M Tinti, F Madeira, G Murugesan, G Hoxhaj, R Toth, C MacKintosh
Database 2014, bat085, 2014
652014
The European nucleotide archive in 2021
C Cummins, A Ahamed, R Aslam, J Burgin, R Devraj, O Edbali, D Gupta, ...
Nucleic acids research 50 (D1), D106-D110, 2022
622022
R2DT is a framework for predicting and visualising RNA secondary structure using templates
BA Sweeney, D Hoksza, EP Nawrocki, CE Ribas, F Madeira, JJ Cannone, ...
Nature Communications 12 (1), 3494, 2021
562021
Park Y. mi
F Madeira
Lee J., Buso N., Gur T., Madhusoodanan N., Basutkar P., Tivey ARN, Potter SC …, 2019
532019
Recommendations for the packaging and containerizing of bioinformatics software
B Gruening, O Sallou, P Moreno, F da Veiga Leprevost, H Ménager, ...
F1000Research 7, 2018
412018
Using EMBL‐EBI Services via Web Interface and Programmatically via Web Services
F Madeira, N Madhusoodanan, J Lee, ARN Tivey, R Lopez
Current protocols in bioinformatics 66 (1), e74, 2019
352019
JABAWS 2.2 distributed web services for Bioinformatics: protein disorder, conservation and RNA secondary structure
PV Troshin, JB Procter, A Sherstnev, DL Barton, F Madeira, GJ Barton
Bioinformatics 34 (11), 1939-1940, 2018
282018
Uniprot tools: bLAST, align, peptide search, and ID mapping
R Zaru, S Orchard, UniProt Consortium
Current Protocols 3 (3), e697, 2023
152023
The Dundee resource for sequence analysis and structure prediction
SA MacGowan, F Madeira, T Britto‐Borges, M Warowny, A Drozdetskiy, ...
Protein Science 29 (1), 277-297, 2020
152020
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