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Kathryn A. Porter
Kathryn A. Porter
Novartis Institutes for BioMedical Research
Verified email at novartis.com
Title
Cited by
Cited by
Year
The ClusPro web server for protein–protein docking
D Kozakov, DR Hall, B Xia, KA Porter, D Padhorny, C Yueh, D Beglov, ...
Nature protocols 12 (2), 255-278, 2017
23272017
Performance and its limits in rigid body protein-protein docking
IT Desta, KA Porter, B Xia, D Kozakov, S Vajda
Structure 28 (9), 1071-1081. e3, 2020
3722020
High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock
N Alam, O Goldstein, B Xia, KA Porter, D Kozakov, O Schueler-Furman
PLoS computational biology 13 (12), e1005905, 2017
1252017
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1112019
What method to use for protein–protein docking?
KA Porter, I Desta, D Kozakov, S Vajda
Current opinion in structural biology 55, 1-7, 2019
1042019
ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT
KA Porter, B Xia, D Beglov, T Bohnuud, N Alam, O Schueler-Furman, ...
Bioinformatics 33 (20), 3299-3301, 2017
1012017
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
762021
Protein–protein docking by fast generalized Fourier transforms on 5D rotational manifolds
D Padhorny, A Kazennov, BS Zerbe, KA Porter, B Xia, SE Mottarella, ...
Proceedings of the National Academy of Sciences 113 (30), E4286-E4293, 2016
672016
Kinase atlas: druggability analysis of potential allosteric sites in kinases
C Yueh, J Rettenmaier, B Xia, DR Hall, A Alekseenko, KA Porter, ...
Journal of medicinal chemistry 62 (14), 6512-6524, 2019
632019
Template‐based modeling by ClusPro in CASP13 and the potential for using co‐evolutionary information in docking
KA Porter, D Padhorny, I Desta, M Ignatov, D Beglov, S Kotelnikov, Z Sun, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1241-1248, 2019
192019
Structure of the MRAS–SHOC2–PP1C phosphatase complex
ZJ Hauseman, M Fodor, A Dhembi, J Viscomi, D Egli, M Bleu, S Katz, ...
Nature 609 (7926), 416-423, 2022
142022
Progress toward improved understanding of antibody maturation
S Vajda, KA Porter, D Kozakov
Current opinion in structural biology 67, 226-231, 2021
142021
ClusPro in rounds 38 to 45 of CAPRI: Toward combining template‐based methods with free docking
D Padhorny, KA Porter, M Ignatov, A Alekseenko, D Beglov, S Kotelnikov, ...
Proteins: Structure, Function, and Bioinformatics 88 (8), 1082-1090, 2020
82020
Conservation of binding properties in protein models
M Egbert, KA Porter, U Ghani, S Kotelnikov, T Nguyen, R Ashizawa, ...
Computational and structural biotechnology journal 19, 2549-2566, 2021
42021
Computational modeling of protein-protein and protein-peptide interactions
KA Porter
Boston University, 2019
2019
Efficient global peptide docking using motif-derived fragments
K Porter, B Xia, D Beglov, O Furman, D Kozakov
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 251, 2016
2016
Prediction of peptide-protein interactions using motif-derived fragments
K Porter, D Beglov, N Alam, O Schueler-Furman, D Kozakov
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 250, 2015
2015
Fast Fourier Transform sampling on the manifolds for modeling protein-protein interactions
D Padhorny, A Kazennov, K Porter, D Hall, D Ritchie, D Kozakov
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 250, 2015
2015
Protein-protein docking by generalized Fourier transforms on 5D rotational manifolds
D Padhorny, A Kazennov, BS Zerbe, K Porter, B Xia, SE Mottarella, ...
Supplementary Information The ClusPro web server for protein-protein docking
D Kozakov, DR Hall, B Xia, KA Porter, D Padhorny, C Yueh, D Beglov, ...
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