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Alexander Tong
Alexander Tong
Mila; Université de Montréal
Verified email at mila.quebec - Homepage
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Cited by
Cited by
Year
Pot: Python optimal transport
R Flamary, N Courty, A Gramfort, MZ Alaya, A Boisbunon, S Chambon, ...
Journal of Machine Learning Research 22 (78), 1-8, 2021
8292021
Quantifying the effect of experimental perturbations at single-cell resolution
DB Burkhardt, JS Stanley III, A Tong, AL Perdigoto, SA Gigante, ...
Nature biotechnology 39 (5), 619-629, 2021
155*2021
Trajectorynet: A dynamic optimal transport network for modeling cellular dynamics
A Tong, J Huang, G Wolf, D Van Dijk, S Krishnaswamy
International conference on machine learning, 9526-9536, 2020
1242020
Improving and generalizing flow-based generative models with minibatch optimal transport
A Tong, N Malkin, G Huguet, Y Zhang, J Rector-Brooks, K Fatras, G Wolf, ...
arXiv preprint arXiv:2302.00482, 2023
74*2023
A sandbox for prediction and integration of DNA, RNA, and proteins in single cells
MD Luecken, DB Burkhardt, R Cannoodt, C Lance, A Agrawal, H Aliee, ...
Thirty-fifth conference on neural information processing systems datasets …, 2021
692021
Multiscale PHATE identifies multimodal signatures of COVID-19
M Kuchroo, J Huang, P Wong, JC Grenier, D Shung, A Tong, C Lucas, ...
Nature biotechnology 40 (5), 681-691, 2022
62*2022
Manifold Interpolating Optimal-Transport Flows for Trajectory Inference
G Huguet, DS Magruder, A Tong, O Fasina, M Kuchroo, G Wolf, ...
Advances in Neural Information Processing Systems, 2022
302022
Understanding Graph Neural Networks with Generalized Geometric Scattering Transforms
M Perlmutter, A Tong, F Gao, G Wolf, M Hirn
SIAM Journal on Mathematics of Data Science 5 (4), 873-898, 2023
27*2023
Diffusion earth mover’s distance and distribution embeddings
AY Tong, G Huguet, A Natik, K MacDonald, M Kuchroo, R Coifman, ...
International Conference on Machine Learning, 10336-10346, 2021
25*2021
Fixing bias in reconstruction-based anomaly detection with lipschitz discriminators
A Tong, G Wolf, S Krishnaswamy
Journal of Signal Processing Systems, 1-15, 2021
242021
Immune cells and their inflammatory mediators modify β cells and cause checkpoint inhibitor–induced diabetes
AL Perdigoto, S Deng, KC Du, M Kuchroo, DB Burkhardt, A Tong, G Israel, ...
JCI insight 7 (17), 2022
232022
Finding archetypal spaces using neural networks
D van Dijk, DB Burkhardt, M Amodio, A Tong, G Wolf, S Krishnaswamy
2019 IEEE International Conference on Big Data (Big Data), 2634-2643, 2019
20*2019
Single-cell analysis reveals inflammatory interactions driving macular degeneration
M Kuchroo, M DiStasio, E Song, E Calapkulu, L Zhang, M Ige, AH Sheth, ...
Nature Communications 14 (1), 2589, 2023
182023
Trellis tree-based analysis reveals stromal regulation of patient-derived organoid drug responses
MR Zapatero, A Tong, JW Opzoomer, R O’Sullivan, FC Rodriguez, J Sufi, ...
Cell 186 (25), 5606-5619. e24, 2023
17*2023
Multimodal data visualization and denoising with integrated diffusion
M Kuchroo, A Godavarthi, A Tong, G Wolf, S Krishnaswamy
2021 IEEE 31st International Workshop on Machine Learning for Signal …, 2021
16*2021
SE (3)-Stochastic Flow Matching for Protein Backbone Generation
AJ Bose, T Akhound-Sadegh, G Huguet, K Fatras, J Rector-Brooks, ...
International Conference on Learning Representations, 2024
142024
Simulation-free Schr\" odinger bridges via score and flow matching
A Tong, N Malkin, K Fatras, L Atanackovic, Y Zhang, G Huguet, G Wolf, ...
International Conference on Artificial Intelligence and Statistics, 2024
142024
Learnable filters for geometric scattering modules
A Tong, F Wenkel, D Bhaskar, K Macdonald, J Grady, M Perlmutter, ...
IEEE Transactions on Signal Processing, 2024
14*2024
Uncovering the folding landscape of RNA secondary structure using deep graph embeddings
E Castro, A Benz, A Tong, G Wolf, S Krishnaswamy
2020 IEEE International Conference on Big Data (Big Data), 4519-4528, 2020
14*2020
DynGFN: Towards Bayesian Inference of Gene Regulatory Networks with GFlowNets
L Atanackovic, A Tong, B Wang, LJ Lee, Y Bengio, J Hartford
Thirty-seventh Conference on Neural Information Processing Systems, 2023
13*2023
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Articles 1–20