| Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum SC Bendall, EF Simonds, P Qiu, ED Amir, PO Krutzik, R Finck, ... Science 332 (6030), 687-696, 2011 | 2489 | 2011 |
| Data-driven phenotypic dissection of AML reveals progenitor-like cells that correlate with prognosis JH Levine, EF Simonds, SC Bendall, KL Davis, DA El-ad, MD Tadmor, ... Cell 162 (1), 184-197, 2015 | 2153 | 2015 |
| viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia ED Amir, KL Davis, MD Tadmor, EF Simonds, JH Levine, SC Bendall, ... Nature biotechnology 31 (6), 545-552, 2013 | 1621 | 2013 |
| Innate immune landscape in early lung adenocarcinoma by paired single-cell analyses Y Lavin, S Kobayashi, A Leader, ED Amir, N Elefant, C Bigenwald, ... Cell 169 (4), 750-765. e17, 2017 | 1122 | 2017 |
| Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development SC Bendall, KL Davis, ED Amir, MD Tadmor, EF Simonds, TJ Chen, ... Cell 157 (3), 714-725, 2014 | 993 | 2014 |
| Single-cell immune landscape of human atherosclerotic plaques DM Fernandez, AH Rahman, NF Fernandez, A Chudnovskiy, ED Amir, ... Nature medicine 25 (10), 1576-1588, 2019 | 742 | 2019 |
| Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm ER Zunder, R Finck, GK Behbehani, ED Amir, S Krishnaswamy, ... Nature protocols 10 (2), 316-333, 2015 | 558 | 2015 |
| Multimodal mapping of the tumor and peripheral blood immune landscape in human pancreatic cancer NG Steele, ES Carpenter, SB Kemp, VR Sirihorachai, S The, L Delrosario, ... Nature Cancer 1 (11), 1097-1112, 2020 | 312 | 2020 |
| Host-protozoan interactions protect from mucosal infections through activation of the inflammasome A Chudnovskiy, A Mortha, V Kana, A Kennard, JD Ramirez, A Rahman, ... Cell 167 (2), 444-456. e14, 2016 | 312 | 2016 |
| Highly multiplexed profiling of single-cell effector functions reveals deep functional heterogeneity in response to pathogenic ligands Y Lu, Q Xue, MR Eisele, ES Sulistijo, K Brower, L Han, ED Amir, D Pe’er, ... Proceedings of the National Academy of Sciences 112 (7), E607-E615, 2015 | 286* | 2015 |
| Protein barcodes enable high-dimensional single-cell CRISPR screens A Wroblewska, M Dhainaut, B Ben-Zvi, SA Rose, ES Park, EAD Amir, ... Cell 175 (4), 1141-1155. e16, 2018 | 153 | 2018 |
| Comprehensive immune monitoring of clinical trials to advance human immunotherapy FJ Hartmann, J Babdor, PF Gherardini, EAD Amir, K Jones, B Sahaf, ... Cell reports 28 (3), 819-831. e4, 2019 | 117 | 2019 |
| Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases D Michlmayr, TR Pak, AH Rahman, EAD Amir, EY Kim, S Kim‐Schulze, ... Molecular systems biology 14 (8), e7862, 2018 | 64 | 2018 |
| Development of a comprehensive antibody staining database using a standardized analytics pipeline ED Amir, B Lee, P Badoual, M Gordon, XV Guo, M Merad, AH Rahman Frontiers in immunology 10, 1315, 2019 | 63 | 2019 |
| Differentiable, multi‐dimensional, knowledge‐based energy terms for torsion angle probabilities and propensities EAD Amir, N Kalisman, C Keasar Proteins: Structure, Function, and Bioinformatics 72 (1), 62-73, 2008 | 47 | 2008 |
| Enhancement of beta-sheet assembly by cooperative hydrogen bonds potential A Levy-Moonshine, ED Amir, C Keasar Bioinformatics 25 (20), 2639-2645, 2009 | 41 | 2009 |
| High-dimensional CyTOF analysis of dengue virus–infected human DCs reveals distinct viral signatures RE Hamlin, A Rahman, TR Pak, K Maringer, I Mena, D Bernal-Rubio, ... JCI insight 2 (13), 2017 | 34 | 2017 |
| Full spectrum flow cytometry and mass cytometry: A 32‐marker panel comparison MC Jaimes, M Leipold, G Kraker, E Amir, H Maecker, J Lannigan Cytometry Part A 101 (11), 942-959, 2022 | 31 | 2022 |
| Deep analysis of the peripheral immune system in IBD reveals new insight in disease subtyping and response to monotherapy or combination therapy R Kosoy, S Kim-Schulze, A Rahman, JR Friedman, R Huang, LA Peters, ... Cellular and molecular gastroenterology and hepatology 12 (2), 599-632, 2021 | 27 | 2021 |
| Average overlap frequency: a simple metric to evaluate staining quality and community identification in high dimensional mass cytometry experiments ED Amir, XV Guo, O Mayovska, AH Rahman Journal of immunological methods 453, 20-29, 2018 | 24 | 2018 |
Dana Pe'erHoward Hughes Medical Institute / Sloan Kettering InstituteVerified email at mskcc.org
