Lei Xie
Lei Xie
Professsor, Hunter College, CUNY; Adjunct Professor, WCM, Cornell University
Verified email at hunter.cuny.edu
Cited by
Cited by
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema
N Deshpande, KJ Addess, WF Bluhm, JC Merino-Ott, ...
Nucleic acids research 33 (suppl_1), D233-D237, 2005
Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling
D Petrey, Z Xiang, CL Tang, L Xie, M Gimpelev, T Mitros, CS Soto, ...
Proteins: Structure, Function, and Bioinformatics 53 (S6), 430-435, 2003
The RCSB PDB information portal for structural genomics
A Kouranov, L Xie, J de la Cruz, L Chen, J Westbrook, PE Bourne, ...
Nucleic acids research 34 (suppl_1), D302-D305, 2006
Drug discovery using chemical systems biology: repositioning the safe medicine Comtan to treat multi-drug and extensively drug resistant tuberculosis
SL Kinnings, N Liu, N Buchmeier, PJ Tonge, L Xie, PE Bourne
PLoS Comput Biol 5 (7), e1000423, 2009
Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors
L Xie, J Li, L Xie, PE Bourne
PLoS Comput Biol 5 (5), e1000387, 2009
Detecting evolutionary relationships across existing fold space, using sequence order-independent profile–profile alignments
L Xie, PE Bourne
Proceedings of the National Academy of sciences 105 (14), 5441-5446, 2008
Drug off-target effects predicted using structural analysis in the context of a metabolic network model
RL Chang, L Xie, L Xie, PE Bourne, Bě Palsson
PLoS Comput Biol 6 (9), e1000938, 2010
Novel computational approaches to polypharmacology as a means to define responses to individual drugs
L Xie, L Xie, SL Kinnings, PE Bourne
Annual review of pharmacology and toxicology 52, 361-379, 2012
Drug discovery using chemical systems biology: weak inhibition of multiple kinases may contribute to the anti-cancer effect of nelfinavir
L Xie, T Evangelidis, L Xie, PE Bourne
PLoS Comput Biol 7 (4), e1002037, 2011
A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites
L Xie, PE Bourne
BMC bioinformatics 8 (S4), S9, 2007
Structure-based systems biology for analyzing off-target binding
L Xie, L Xie, PE Bourne
Current opinion in structural biology 21 (2), 189-199, 2011
A machine learning-based method to improve docking scoring functions and its application to drug repurposing
SL Kinnings, N Liu, PJ Tonge, RM Jackson, L Xie, PE Bourne
Journal of chemical information and modeling 51 (2), 408-419, 2011
A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery
L Xie, L Xie, PE Bourne
Bioinformatics 25 (12), i305-i312, 2009
On the role of structural information in remote homology detection and sequence alignment: new methods using hybrid sequence profiles
CL Tang, L Xie, IYY Koh, S Posy, E Alexov, B Honig
Journal of molecular biology 334 (5), 1043-1062, 2003
Quantifying reproducibility in computational biology: the case of the tuberculosis drugome
D Garijo, S Kinnings, L Xie, L Xie, Y Zhang, PE Bourne, Y Gil
PloS one 8 (11), e80278, 2013
The Mycobacterium tuberculosis drugome and its polypharmacological implications
SL Kinnings, L Xie, KH Fung, RM Jackson, L Xie, PE Bourne
PLoS Comput Biol 6 (11), e1000976, 2010
A multidimensional strategy to detect polypharmacological targets in the absence of structural and sequence homology
JD Durrant, RE Amaro, L Xie, MD Urbaniak, MAJ Ferguson, ...
PLoS Comput Biol 6 (1), e1000648, 2010
In silico elucidation of the molecular mechanism defining the adverse effect of selective estrogen receptor modulators
L Xie, J Wang, PE Bourne
PLoS Comput Biol 3 (11), e217, 2007
Functional coverage of the human genome by existing structures, structural genomics targets, and homology models
L Xie, PE Bourne
PLoS Comput Biol 1 (3), e31, 2005
Raloxifene attenuates< i> Pseudomonas aeruginosa</i> pyocyanin production and virulence
SJ Ho Sui, R Lo, AR Fernandes, MDG Caulfield, JA Lerman, L Xie, ...
International Journal of Antimicrobial Agents, 2012
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