Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data Y Kawahara, M de la Bastide, JP Hamilton, H Kanamori, WR McCombie, ... Rice 6, 1-10, 2013 | 1929 | 2013 |
The TIGR rice genome annotation resource: improvements and new features S Ouyang, W Zhu, J Hamilton, H Lin, M Campbell, K Childs, ... Nucleic acids research 35 (suppl_1), D883-D887, 2006 | 1312 | 2006 |
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis MA Campbell, BJ Haas, JP Hamilton, SM Mount, CR Buell BMC genomics 7 (1), 327, 2006 | 463 | 2006 |
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire CA Levesque, H Brouwer, L Cano, JP Hamilton, C Holt, E Huitema, ... Genome biology 11, 1-22, 2010 | 437 | 2010 |
Genome diversity of tuber-bearing Solanum uncovers complex evolutionary history and targets of domestication in the cultivated potato MA Hardigan, FPE Laimbeer, L Newton, E Crisovan, JP Hamilton, ... Proceedings of the National Academy of Sciences 114 (46), E9999-E10008, 2017 | 370 | 2017 |
Development of a large SNP genotyping array and generation of high-density genetic maps in tomato SC Sim, G Durstewitz, J Plieske, R Wieseke, MW Ganal, A Van Deynze, ... PLoS One 7 (7), e40563, 2012 | 369 | 2012 |
Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps SK Sharma, D Bolser, J de Boer, M Sønderkær, W Amoros, MF Carboni, ... G3: Genes, Genomes, Genetics 3 (11), 2031-2047, 2013 | 279 | 2013 |
Single nucleotide polymorphism discovery in elite North American potato germplasm JP Hamilton, CN Hansey, BR Whitty, K Stoffel, AN Massa, A Van Deynze, ... BMC genomics 12 (1), 302, 2011 | 267 | 2011 |
Advances in plant genome sequencing JP Hamilton, C Robin Buell The Plant Journal 70 (1), 177-190, 2012 | 256 | 2012 |
Integration of two diploid potato linkage maps with the potato genome sequence KJ Felcher, JJ Coombs, AN Massa, CN Hansey, JP Hamilton, RE Veilleux, ... PLoS One 7 (4), e36347, 2012 | 252 | 2012 |
Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement S Wu, KH Lau, Q Cao, JP Hamilton, H Sun, C Zhou, L Eserman, ... Nature Communications 9 (1), 4580, 2018 | 242 | 2018 |
Genome‐guided investigation of plant natural product biosynthesis F Kellner, J Kim, BJ Clavijo, JP Hamilton, KL Childs, B Vaillancourt, ... The Plant Journal 82 (4), 680-692, 2015 | 233 | 2015 |
The institute for genomic research Osa1 rice genome annotation database Q Yuan, S Ouyang, A Wang, W Zhu, R Maiti, H Lin, J Hamilton, B Haas, ... Plant physiology 138 (1), 18-26, 2005 | 229 | 2005 |
Construction of a chromosome-scale long-read reference genome assembly for potato GM Pham, JP Hamilton, JC Wood, JT Burke, H Zhao, B Vaillancourt, S Ou, ... GigaScience 9 (9), giaa100, 2020 | 223 | 2020 |
The TIGR plant transcript assemblies database KL Childs, JP Hamilton, W Zhu, E Ly, F Cheung, H Wu, PD Rabinowicz, ... Nucleic Acids Research 35 (suppl_1), D846-D851, 2006 | 210 | 2006 |
Haplotype-resolved genome analyses of a heterozygous diploid potato Q Zhou, D Tang, W Huang, Z Yang, Y Zhang, JP Hamilton, RGF Visser, ... Nature Genetics, 1-6, 2020 | 196 | 2020 |
Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species E Góngora-Castillo, KL Childs, G Fedewa, JP Hamilton, DK Liscombe, ... PloS one 7 (12), e52506, 2012 | 191 | 2012 |
Genome reduction uncovers a large dispensable genome and adaptive role for copy number variation in asexually propagated Solanum tuberosum MA Hardigan, E Crisovan, JP Hamilton, J Kim, P Laimbeer, CP Leisner, ... The Plant Cell 28 (2), 388-405, 2016 | 188 | 2016 |
Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes BN Adhikari, JP Hamilton, MM Zerillo, N Tisserat, CA Lévesque, CR Buell PLoS One 8 (10), e75072, 2013 | 187 | 2013 |
The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications N Choisne, N Demange, G Orjeda, S Samain, A D'Hont, L Cattolico, ... BMC biology 3, 2005 | 165 | 2005 |