John Hamilton
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Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data
Y Kawahara, M de la Bastide, JP Hamilton, H Kanamori, WR McCombie, ...
Rice 6 (1), 4, 2013
The TIGR rice genome annotation resource: improvements and new features
S Ouyang, W Zhu, J Hamilton, H Lin, M Campbell, K Childs, ...
Nucleic acids research 35 (suppl_1), D883-D887, 2006
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
CA Lévesque, H Brouwer, L Cano, JP Hamilton, C Holt, E Huitema, ...
Genome biology 11 (7), R73, 2010
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
MA Campbell, BJ Haas, JP Hamilton, SM Mount, CR Buell
BMC genomics 7 (1), 327, 2006
Development of a large SNP genotyping array and generation of high-density genetic maps in tomato
SC Sim, G Durstewitz, J Plieske, R Wieseke, MW Ganal, A Van Deynze, ...
PLoS One 7 (7), e40563, 2012
The institute for genomic research Osa1 rice genome annotation database
Q Yuan, S Ouyang, A Wang, W Zhu, R Maiti, H Lin, J Hamilton, B Haas, ...
Plant physiology 138 (1), 18-26, 2005
Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps
SK Sharma, D Bolser, J de Boer, M Sønderkær, W Amoros, MF Carboni, ...
G3: Genes, Genomes, Genetics 3 (11), 2031-2047, 2013
The TIGR plant transcript assemblies database
KL Childs, JP Hamilton, W Zhu, E Ly, F Cheung, H Wu, PD Rabinowicz, ...
Nucleic Acids Research 35 (suppl_1), D846-D851, 2006
Single nucleotide polymorphism discovery in elite North American potato germplasm
JP Hamilton, CN Hansey, BR Whitty, K Stoffel, AN Massa, A Van Deynze, ...
BMC genomics 12 (1), 302, 2011
Advances in plant genome sequencing
JP Hamilton, C Robin Buell
The Plant Journal 70 (1), 177-190, 2012
Integration of two diploid potato linkage maps with the potato genome sequence
KJ Felcher, JJ Coombs, AN Massa, CN Hansey, JP Hamilton, RE Veilleux, ...
PLoS One 7 (4), e36347, 2012
Genome diversity of tuber-bearing Solanum uncovers complex evolutionary history and targets of domestication in the cultivated potato
MA Hardigan, FPE Laimbeer, L Newton, E Crisovan, JP Hamilton, ...
Proceedings of the National Academy of Sciences 114 (46), E9999-E10008, 2017
Development of transcriptomic resources for interrogating the biosynthesis of monoterpene indole alkaloids in medicinal plant species
E Góngora-Castillo, KL Childs, G Fedewa, JP Hamilton, DK Liscombe, ...
PloS one 7 (12), e52506, 2012
Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes
BN Adhikari, JP Hamilton, MM Zerillo, N Tisserat, CA Lévesque, CR Buell
PLoS One 8 (10), e75072, 2013
Genome‐guided investigation of plant natural product biosynthesis
F Kellner, J Kim, BJ Clavijo, JP Hamilton, KL Childs, B Vaillancourt, ...
The Plant Journal 82 (4), 680-692, 2015
Genome reduction uncovers a large dispensable genome and adaptive role for copy number variation in asexually propagated Solanum tuberosum
MA Hardigan, E Crisovan, JP Hamilton, J Kim, P Laimbeer, CP Leisner, ...
The Plant Cell 28 (2), 388-405, 2016
Gene amplification of 5-enol-pyruvylshikimate-3-phosphate synthase in glyphosate-resistant Kochia scoparia
AT Wiersma, TA Gaines, C Preston, JP Hamilton, D Giacomini, CR Buell, ...
Planta 241 (2), 463-474, 2015
The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications
N Choisne, N Demange, G Orjeda, S Samain, A D'Hont, L Cattolico, ...
BMC biology 3, 2005
A stereoselective hydroxylation step of alkaloid biosynthesis by a unique cytochrome P450 in Catharanthus roseus
LA Giddings, DK Liscombe, JP Hamilton, KL Childs, D DellaPenna, ...
Journal of Biological Chemistry 286 (19), 16751-16757, 2011
Genomics-based diagnostic marker development for Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola
JM Lang, JP Hamilton, MGQ Diaz, MA Van Sluys, MRG Burgos, ...
Plant Disease 94 (3), 311-319, 2010
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