Zachary A. King
Zachary A. King
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Cited by
Constraint-based models predict metabolic and associated cellular functions
A Bordbar, JM Monk, ZA King, BO Palsson
Nature Reviews Genetics 15 (2), 107-120, 2014
BiGG Models: A platform for integrating, standardizing and sharing genome-scale models
ZA King, J Lu, A Dräger, P Miller, S Federowicz, JA Lerman, A Ebrahim, ...
Nucleic acids research 44 (D1), D515-D522, 2016
In vitro and in vivo evaluation of PEDOT microelectrodes for neural stimulation and recording
S Venkatraman, J Hendricks, ZA King, AJ Sereno, S Richardson-Burns, ...
IEEE transactions on neural systems and rehabilitation engineering 19 (3 …, 2011
Escher: a web application for building, sharing, and embedding data-rich visualizations of biological pathways
ZA King, A Dräger, A Ebrahim, N Sonnenschein, NE Lewis, BO Palsson
PLoS Comput Biol 11 (8), e1004321, 2015
The morphology of poly (3, 4-ethylenedioxythiophene)
DC Martin, J Wu, CM Shaw, Z King, SA Spanninga, S Richardson-Burns, ...
Polymer Reviews 50 (3), 340-384, 2010
Next-generation genome-scale models for metabolic engineering
ZA King, CJ Lloyd, AM Feist, BO Palsson
Current opinion in biotechnology 35, 23-29, 2015
i ML1515, a knowledgebase that computes Escherichia coli traits
JM Monk, CJ Lloyd, E Brunk, N Mih, A Sastry, Z King, R Takeuchi, ...
Nature biotechnology 35 (10), 904-908, 2017
A consensus genome-scale reconstruction of Chinese hamster ovary cell metabolism
H Hefzi, KS Ang, M Hanscho, A Bordbar, D Ruckerbauer, M Lakshmanan, ...
Cell Systems 3 (5), 434-443. e8, 2016
Structural, chemical and electrochemical characterization of poly (3, 4-Ethylenedioxythiophene)(PEDOT) prepared with various counter-ions and heat treatments
ZA King, CM Shaw, SA Spanninga, DC Martin
Polymer 52 (5), 1302-1308, 2011
A model‐driven quantitative metabolomics analysis of aerobic and anaerobic metabolism in E. coli K‐12 MG1655 that is biochemically and thermodynamically …
D McCloskey, JA Gangoiti, ZA King, RK Naviaux, BA Barshop, ...
Biotechnology and bioengineering 111 (4), 803-815, 2014
COBRAme: A computational framework for genome-scale models of metabolism and gene expression
CJ Lloyd, A Ebrahim, L Yang, ZA King, E Catoiu, EJ O’Brien, JK Liu, ...
PLoS computational biology 14 (7), e1006302, 2018
Co-electrodeposited hydrogel-conducting polymer electrodes for biomedical applications
S Richardson-Burns, JL Hendricks, DC Martin, A Sereno, Z King, E Jan
US Patent 9,084,546, 2015
Optimizing cofactor specificity of oxidoreductase enzymes for the generation of microbial production strains—OptSwap
ZA King, AM Feist
Industrial Biotechnology 9 (4), 236-246, 2013
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite
C Lieven, ME Beber, BG Olivier, FT Bergmann, P Babaei, JA Bartell, ...
BioRxiv, 350991, 2018
Optimal cofactor swapping can increase the theoretical yield for chemical production in Escherichia coli and Saccharomyces cerevisiae
ZA King, AM Feist
Metabolic engineering 24, 117-128, 2014
The y-ome defines the 35% of Escherichia coli genes that lack experimental evidence of function
S Ghatak, ZA King, A Sastry, BO Palsson
Nucleic acids research 47 (5), 2446-2454, 2019
Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion
ZA King, EJ O'Brien, AM Feist, BO Palsson
Metabolic Engineering 39, 220–227, 2017
The Escherichia coli transcriptome mostly consists of independently regulated modules
AV Sastry, Y Gao, R Szubin, Y Hefner, S Xu, D Kim, KS Choudhary, ...
Nature communications 10 (1), 1-14, 2019
Modeling the multi-scale mechanisms of macromolecular resource allocation
L Yang, JT Yurkovich, ZA King, BO Palsson
Current opinion in microbiology 45, 8-15, 2018
Enzyme promiscuity shapes adaptation to novel growth substrates
GI Guzmán, TE Sandberg, RA LaCroix, Á Nyerges, H Papp, M de Raad, ...
Molecular systems biology 15 (4), e8462, 2019
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