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Ruth Isserlin
Ruth Isserlin
Donnelly Centre, University of Toronto
Verified email at utoronto.ca
Title
Cited by
Cited by
Year
Integration of biological networks and gene expression data using Cytoscape
MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ...
Nature protocols 2 (10), 2366-2382, 2007
25132007
A draft map of the human proteome
MS Kim, SM Pinto, D Getnet, RS Nirujogi, SS Manda, R Chaerkady, ...
Nature 509 (7502), 575-581, 2014
20922014
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation
D Merico, R Isserlin, O Stueker, A Emili, GD Bader
PloS one 5 (11), e13984, 2010
17552010
Pathway enrichment analysis and visualization of omics data using g: Profiler, GSEA, Cytoscape and EnrichmentMap
J Reimand, R Isserlin, V Voisin, M Kucera, C Tannus-Lopes, ...
Nature protocols 14 (2), 482-517, 2019
8372019
The biomolecular interaction network database and related tools 2005 update
C Alfarano, CE Andrade, K Anthony, N Bahroos, M Bajec, K Bantoft, ...
Nucleic acids research 33 (suppl_1), D418-D424, 2005
7282005
Delineation of two clinically and molecularly distinct subgroups of posterior fossa ependymoma
H Witt, SC Mack, M Ryzhova, S Bender, M Sill, R Isserlin, A Benner, ...
Cancer cell 20 (2), 143-157, 2011
4882011
A call for systematic research on solute carriers
A CÚsar-Razquin, B Snijder, T Frappier-Brinton, R Isserlin, G Gyimesi, ...
Cell 162 (3), 478-487, 2015
4242015
Too many roads not taken
AM Edwards, R Isserlin, GD Bader, SV Frye, TM Willson, FH Yu
Nature 470 (7333), 163-165, 2011
3712011
PSICQUIC and PSISCORE: accessing and scoring molecular interactions
B Aranda, H Blankenburg, S Kerrien, FSL Brinkman, A Ceol, E Chautard, ...
Nature methods 8 (7), 528-529, 2011
2972011
Single-cell transcriptomic profiling of the aging mouse brain
M Ximerakis, SL Lipnick, BT Innes, SK Simmons, X Adiconis, D Dionne, ...
Nature neuroscience 22 (10), 1696-1708, 2019
2402019
miR-126 regulates distinct self-renewal outcomes in normal and malignant hematopoietic stem cells
ER Lechman, B Gentner, SWK Ng, EM Schoof, P van Galen, JA Kennedy, ...
Cancer cell 29 (2), 214-228, 2016
2342016
AutoAnnotate: A Cytoscape app for summarizing networks with semantic annotations
M Kucera, R Isserlin, A Arkhangorodsky, GD Bader
F1000Research 5, 2016
1962016
Comparative proteomics profiling of a phospholamban mutant mouse model of dilated cardiomyopathy reveals progressive intracellular stress responses
AO Gramolini, T Kislinger, R Alikhani-Koopaei, V Fong, NJ Thompson, ...
Molecular & Cellular Proteomics 7 (3), 519-533, 2008
1262008
WordCloud: a Cytoscape plugin to create a visual semantic summary of networks
L Oesper, D Merico, R Isserlin, GD Bader
Source code for biology and medicine 6 (1), 1-4, 2011
1182011
The biomolecular interaction network database in PSI-MI 2.5
R Isserlin, RA El-Badrawi, GD Bader
Database 2011, 2011
1152011
Enrichment Map–a Cytoscape app to visualize and explore OMICs pathway enrichment results
R Isserlin, D Merico, V Voisin, GD Bader
F1000Research 3, 2014
1092014
A lentiviral functional proteomics approach identifies chromatin remodeling complexes important for the induction of pluripotency
AB Mak, Z Ni, JA Hewel, GI Chen, G Zhong, K Karamboulas, K Blakely, ...
Molecular & Cellular Proteomics 9 (5), 811-823, 2010
1082010
Visualizing gene-set enrichment results using the Cytoscape plug-in enrichment map
D Merico, R Isserlin, GD Bader
Network biology, 257-277, 2011
742011
RCy3: Network biology using Cytoscape from within R
JA Gustavsen, S Pai, R Isserlin, B Demchak, AR Pico
F1000Research 8, 2019
712019
SeqHound: biological sequence and structure database as a platform for bioinformatics research
K Michalickova, GD Bader, M Dumontier, H Lieu, D Betel, R Isserlin, ...
BMC bioinformatics 3 (1), 1-13, 2002
702002
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Articles 1–20