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William "Bill" Andreopoulos
William "Bill" Andreopoulos
Assistant Professor, Computer Science, San Jose State University
Verified email at lbl.gov
Title
Cited by
Cited by
Year
Data classification
CC Aggarwal, CC Aggarwal
Data Mining: The Textbook, 285-344, 2015
31482015
A roadmap of clustering algorithms: finding a match for a biomedical application
B Andreopoulos, A An, X Wang, M Schroeder
Briefings in bioinformatics 10 (3), 297-314, 2009
3212009
Widespread adenine N6-methylation of active genes in fungi
SJ Mondo, RO Dannebaum, RC Kuo, KB Louie, AJ Bewick, K LaButti, ...
Nature genetics 49 (6), 964-968, 2017
3012017
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler, M Sánchez-García, E Morin, ...
Nature communications 11 (1), 5125, 2020
2882020
Megaphylogeny resolves global patterns of mushroom evolution
T Varga, K Krizsán, C Földi, B Dima, M Sánchez-García, ...
Nature Ecology & Evolution 3 (4), 668-678, 2019
2172019
Unraveling protein networks with power graph analysis
L Royer, M Reimann, B Andreopoulos, M Schroeder
PLoS computational biology 4 (7), e1000108, 2008
1792008
101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens
S Haridas, R Albert, M Binder, J Bloem, K LaButti, A Salamov, ...
Studies in mycology 96 (1), 141-153, 2020
1692020
Phage-specific metabolic reprogramming of virocells
C Howard-Varona, MM Lindback, GE Bastien, N Solonenko, AA Zayed, ...
The ISME journal 14 (4), 881-895, 2020
1442020
Leveraging single-cell genomics to expand the fungal tree of life
SR Ahrendt, CA Quandt, D Ciobanu, A Clum, A Salamov, B Andreopoulos, ...
Nature Microbiology 3 (12), 1417-1428, 2018
1112018
Next generation sequencing data of a defined microbial mock community
E Singer, B Andreopoulos, RM Bowers, J Lee, S Deshpande, J Chiniquy, ...
Scientific data 3 (1), 1-8, 2016
1012016
Genomic analysis enlightens Agaricales lifestyle evolution and increasing peroxidase diversity
FJ Ruiz-Dueñas, JM Barrasa, M Sánchez-García, S Camarero, ...
Molecular biology and evolution 38 (4), 1428-1446, 2021
752021
Genetic determinants of endophytism in the Arabidopsis root mycobiome
F Mesny, S Miyauchi, T Thiergart, B Pickel, L Atanasova, M Karlsson, ...
Nature communications 12 (1), 7227, 2021
662021
Biomedical word sense disambiguation with ontologies and metadata: automation meets accuracy
D Alexopoulou, B Andreopoulos, H Dietze, A Doms, F Gandon, ...
BMC bioinformatics 10, 1-15, 2009
512009
Convolutional neural networks and extreme learning machines for malware classification
M Jain, W Andreopoulos, M Stamp
Journal of Computer Virology and Hacking Techniques 16, 229-244, 2020
502020
Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613
H Park, B Min, Y Jang, J Kim, A Lipzen, A Sharma, B Andreopoulos, ...
Applied microbiology and biotechnology 103, 8145-8155, 2019
482019
Clustering large software systems at multiple layers
B Andreopoulos, A An, V Tzerpos, X Wang
Information and Software Technology 49 (3), 244-254, 2007
452007
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi
LA Lofgren, NH Nguyen, R Vilgalys, J Ruytinx, HL Liao, S Branco, A Kuo, ...
New Phytologist 230 (2), 774-792, 2021
402021
Clustering by common friends finds locally significant proteins mediating modules
B Andreopoulos, A An, X Wang, M Faloutsos, M Schroeder
Bioinformatics 23 (9), 1124-1131, 2007
392007
The extracellular contractile injection system is enriched in environmental microbes and associates with numerous toxins
AM Geller, I Pollin, D Zlotkin, A Danov, N Nachmias, WB Andreopoulos, ...
Nature communications 12 (1), 3743, 2021
362021
Hierarchical density-based clustering of categorical data and a simplification
B Andreopoulos, A An, X Wang
Advances in Knowledge Discovery and Data Mining: 11th Pacific-Asia …, 2007
352007
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