Alexander R Pico

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Chris EveloHead Department of Bioinformatics - BiGCaT, Maastricht University ORCID:0000-0002-5301-3142Verified email at maastrichtuniversity.nl
Bruce ConklinInvestigator Gladstone and Professor at UCSFVerified email at gladstone.ucsf.edu
Thomas KelderCTO, EdgeLeap, The NetherlandsVerified email at edgeleap.com
Martina KutmonAssistant professor, Maastricht University, The NetherlandsVerified email at maastrichtuniversity.nl
Gary BaderProfessor of Molecular Genetics and Computer Science, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
John H MorrisUCSFVerified email at cgl.ucsf.edu
Anders RiuttaInstitute for Data Science and Biotechnology, Gladstone InstitutesVerified email at andersriutta.com
Egon WillighagenAssistant Professor at BiGCaT, Maastricht University The Netherlands, ORCID:0000-0001-7542-0286Verified email at maastrichtuniversity.nl
Nathan SalomonisAssociate Professor Cincinnati Children's Hospital Medical CenterVerified email at cchmc.org
Andra WaagmeesterMicelio bvbaVerified email at micelio.be
Dr. Susan Steinbusch-CoortAssistant Professor, dept of Bionformatics-BiGCaT, NUTRIM, Maastricht University, NLVerified email at maastrichtuniversity.nl
Ryan A. MillerMaastricht UniversityVerified email at maastrichtuniversity.nl
Trey IdekerUniversity of California San DiegoVerified email at ucsd.edu
Marvin MartensPhD Candidate, Maastricht UniversityVerified email at maastrichtuniversity.nl
Anwesha Bohler (née Dutta)Program Manager, AmazonVerified email at amazon.com
Alexander C ZambonDepartment of Pharmaceutical Sciences Keck Graduate InstituteVerified email at kgi.edu
Venkatesh L. Murthy, MD, PhDAssociate Chief of Cardiology for Translational Research & Innovation, University of MichiganVerified email at umich.edu
Keiichiro OnoUniversity of California, San DiegoVerified email at ucsd.edu
John WienckeUniversity of California San FranciscoVerified email at ucsf.edu
Elisa CirilloVerified email at maastrichtuniversity.nl

Alexander R Pico

Gladstone Institutes

Verified email at gladstone.ucsf.edu - Homepage

Systems Biology Network Biology Bioinformatics Data Visualization Open Source


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Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007	2471	2007
Glioma Groups Based on 1p/19q, IDH, and TERT Promoter Mutations in Tumors JE Eckel-Passow, DH Lachance, AM Molinaro, KM Walsh, PA Decker, ... New England Journal of Medicine 372 (26), 2499-2508, 2015	1523	2015
A travel guide to Cytoscape plugins R Saito, ME Smoot, K Ono, J Ruscheinski, PL Wang, S Lotia, AR Pico, ... Nature methods 9 (11), 1069-1076, 2012	1276	2012
WikiPathways: pathway editing for the people AR Pico, T Kelder, MP Van Iersel, K Hanspers, BR Conklin, C Evelo PLoS biology 6 (7), e184, 2008	651	2008
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research DN Slenter, M Kutmon, K Hanspers, A Riutta, J Windsor, N Nunes, ... Nucleic acids research 46 (D1), D661-D667, 2018	618	2018
Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage JA Wamstad, JM Alexander, RM Truty, A Shrikumar, F Li, KE Eilertson, ... Cell 151 (1), 206-220, 2012	584	2012
WikiPathways: building research communities on biological pathways T Kelder, MP Van Iersel, K Hanspers, M Kutmon, BR Conklin, CT Evelo, ... Nucleic acids research 40 (D1), D1301-D1307, 2012	575	2012
Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility M Wrensch, RB Jenkins, JS Chang, RF Yeh, Y Xiao, PA Decker, ... Nature genetics 41 (8), 905-908, 2009	522	2009
Crystal structure of Hck in complex with a Src family–selective tyrosine kinase inhibitor T Schindler, F Sicheri, A Pico, A Gazit, A Levitzki, J Kuriyan Molecular cell 3 (5), 639-648, 1999	508	1999
Cytoscape automation: empowering workflow-based network analysis D Otasek, JH Morris, J Bouças, AR Pico, B Demchak Genome biology 20 (1), 1-15, 2019	453	2019
WikiPathways: capturing the full diversity of pathway knowledge M Kutmon, A Riutta, N Nunes, K Hanspers, EL Willighagen, A Bohler, ... Nucleic acids research 44 (D1), D488-D494, 2016	426	2016
Presenting and exploring biological pathways with PathVisio MP van Iersel, T Kelder, AR Pico, K Hanspers, S Coort, BR Conklin, ... BMC bioinformatics 9 (1), 1-9, 2008	408	2008
Structure of the RCK domain from the E. coli K+ channel and demonstration of its presence in the human BK channel Y Jiang, A Pico, M Cadene, BT Chait, R MacKinnon Neuron 29 (3), 593-601, 2001	373	2001
PathVisio 3: an extendable pathway analysis toolbox M Kutmon, MP van Iersel, A Bohler, T Kelder, N Nunes, AR Pico, CT Evelo PLoS computational biology 11 (2), e1004085, 2015	365	2015
GenMAPP 2: new features and resources for pathway analysis N Salomonis, K Hanspers, AC Zambon, K Vranizan, SC Lawlor, ... BMC bioinformatics 8 (1), 1-12, 2007	318	2007
Structure of the human BK channel Ca2+-activation apparatus at 3.0 Å resolution P Yuan, MD Leonetti, AR Pico, Y Hsiung, R MacKinnon Science 329 (5988), 182-186, 2010	311	2010
GO-Elite: a flexible solution for pathway and ontology over-representation AC Zambon, S Gaj, I Ho, K Hanspers, K Vranizan, CT Evelo, BR Conklin, ... Bioinformatics 28 (16), 2209-2210, 2012	272	2012
Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation N Salomonis, CR Schlieve, L Pereira, C Wahlquist, A Colas, AC Zambon, ... Proceedings of the National Academy of Sciences 107 (23), 10514-10519, 2010	237	2010
Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019	205	2019
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services MP van Iersel, AR Pico, T Kelder, J Gao, I Ho, K Hanspers, BR Conklin, ... BMC bioinformatics 11 (1), 1-7, 2010	180	2010

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