| Improved methods for predicting peptide binding affinity to MHC class II molecules KK Jensen, M Andreatta, P Marcatili, S Buus, JA Greenbaum, Z Yan, ... Immunology 154 (3), 394-406, 2018 | 727 | 2018 |
| NetSurfP‐2.0: Improved prediction of protein structural features by integrated deep learning MS Klausen, MC Jespersen, H Nielsen, KK Jensen, VI Jurtz, ... Proteins: Structure, Function, and Bioinformatics 87 (6), 520-527, 2019 | 527 | 2019 |
| Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis J Waage, M Standl, JA Curtin, LE Jessen, J Thorsen, C Tian, N Schoettler, ... Nature genetics 50 (8), 1072-1080, 2018 | 129 | 2018 |
| T cell receptor fingerprinting enables in-depth characterization of the interactions governing recognition of peptide–MHC complexes AK Bentzen, L Such, KK Jensen, AM Marquard, LE Jessen, NJ Miller, ... Nature biotechnology 36 (12), 1191-1196, 2018 | 94 | 2018 |
| NetTCR: sequence-based prediction of TCR binding to peptide-MHC complexes using convolutional neural networks VI Jurtz, LE Jessen, AK Bentzen, MC Jespersen, S Mahajan, R Vita, ... BioRxiv, 433706, 2018 | 90 | 2018 |
| Neoantigen-reactive CD8+ T cells affect clinical outcome of adoptive cell therapy with tumor-infiltrating lymphocytes in melanoma NP Kristensen, C Heeke, SA Tvingsholm, A Borch, A Draghi, ... The Journal of clinical investigation 132 (2), 2022 | 74 | 2022 |
| Neoantigen-specific CD8 T cell responses in the peripheral blood following PD-L1 blockade might predict therapy outcome in metastatic urothelial carcinoma JS Holm, SA Funt, A Borch, KK Munk, AM Bjerregaard, JL Reading, ... Nature Communications 13 (1), 1935, 2022 | 46 | 2022 |
| TCRpMHCmodels: Structural modelling of TCR-pMHC class I complexes KK Jensen, V Rantos, EC Jappe, TH Olsen, MC Jespersen, V Jurtz, ... Scientific reports 9 (1), 14530, 2019 | 44 | 2019 |
| Three doses of BNT162b2 COVID-19 mRNA vaccine establish long-lasting CD8+ T cell immunity in CLL and MDS patients SPA Hernandez, DS Hersby, KK Munk, T Tamhane, D Trubach, ... Frontiers in Immunology 13, 1035344, 2023 | 12 | 2023 |
| Benchmark datasets of immune receptor-epitope structural complexes S Mahajan, Z Yan, MC Jespersen, KK Jensen, P Marcatili, M Nielsen, ... BMC bioinformatics 20, 1-7, 2019 | 12 | 2019 |
| TCR-engaging scaffolds selectively expand antigen-specific T-cells with a favorable phenotype for adoptive cell therapy SA Tvingsholm, MS Frej, VM Rafa, UK Hansen, M Ormhøj, A Tyron, ... Journal for immunotherapy of cancer 11 (8), 2023 | 5 | 2023 |
| Automated clustering analysis of immunoglobulin sequences in chronic lymphocytic leukemia based on 3D structural descriptors P Marcatili, K Mochament, A Agathangelidis, P Moschonas, LA Sutton, ... Blood 128 (22), 4365, 2016 | 2 | 2016 |
| Predicting TCR cross-reactivity using structural peptide-MHC models K Munk, A Bentzen, A Borch, S Hadrup Scandinavian Journal of Immunology 94 (6), 26, 2021 | | 2021 |
| Improved prediction methods for understanding the TCR-peptide-MHC interaction KK Munk DTU Health Technology, 2019 | | 2019 |
