| Exploring the effect of mechanical anisotropy of protein structures in the unfoldase mechanism of AAA+ molecular machines RA Varikoti, HYY Fonseka, MS Kelly, A Javidi, M Damre, S Mullen, ... Nanomaterials 12 (11), 1849, 2022 | 6 | 2022 |
| Design, Rationalization, and Automation of a Catalytic Sensing Mechanism for Homogeneous SERS Biosensors SM Quarin, AC Macke, LN Kissell, MS Kelly, A Dayananda, J Ungvary, ... ACS sensors 8 (5), 2000-2010, 2023 | 4 | 2023 |
| Microtubule assembly and disassembly dynamics model: Exploring dynamic instability and identifying features of Microtubules’ Growth, Catastrophe, Shortening, and Rescue E Kliuchnikov, E Klyshko, MS Kelly, A Zhmurov, RI Dima, KA Marx, ... Computational and Structural Biotechnology Journal 20, 953-974, 2022 | 4 | 2022 |
| Microtubule severing enzymes oligomerization and allostery: a tale of two domains AC Macke, MS Kelly, RA Varikoti, S Mullen, D Groves, C Forbes, RI Dima The Journal of Physical Chemistry B 126 (50), 10569-10586, 2022 | 3 | 2022 |
| The quaternary question: Determining allostery in spastin through dynamics classification learning and bioinformatics MS Kelly, AC Macke, S Kahawatte, JE Stump, AR Miller, RI Dima The Journal of Chemical Physics 158 (12), 2023 | 1 | 2023 |
| Optimizing biophysical predictor selection for katanin allosteric transitions via metadynamics and machine learning MS Kelly, R Capelli, S Kahawatte, H Wijethunga, P Carloni, RI Dima Biophysical Journal 123 (3), 273a, 2024 | | 2024 |
| All things allostery: Characterizing the allosteric control of the conformational transition of the spastin severing motor AC Macke, CS Clair, SD Kahawatte, MS Kelly, RI Dima Biophysical Journal 123 (3), 272a, 2024 | | 2024 |
| Searching for Structure: Characterizing the Protein Conformational Landscape with Clustering-Based Algorithms AC Macke, JE Stump, MS Kelly, J Rowley, V Herath, S Mullen, RI Dima Journal of Chemical Information and Modeling 64 (2), 470-482, 2024 | | 2024 |
| Machine Learning Approaches in Label-Free Small Extracellular Vesicles Analysis with Surface-Enhanced Raman Scattering (SERS) for Cancer Diagnostics D Vang, M Kelly, M Sharma, M Sheokand, L Esfandiari, RI Dima, ... bioRxiv, 2024.02. 19.581099, 2024 | | 2024 |
| Determining quaternary allostery of the spastin motor through bioinformatics and graph networks A Macke, M Kelly, S Kahawatte, A Miller, R Dima, MSK Team, RID Team APS March Meeting Abstracts 2023, D08. 007, 2023 | | 2023 |
| Probing Severing Enzyme's Functional States with Molecular Simulations and Machine Learning Approaches M Kelly APS March Meeting Abstracts 2023, D08. 006, 2023 | | 2023 |
| Effects of Tubulin Tail Post-Translational Modifications on Microtubule-Severing Protein's Dynamics J Stump, M Kelly, A Macke, S Kahawatte, E Meilinger, R Dima Undergraduate Scholarly Showcase 4 (1), 2022 | | 2022 |
| Breaking down microtubule severing motors with machine learning AC Macke, RI Dima, RA Varikoti, MS Kelly Biophysical Journal 121 (3), 116a, 2022 | | 2022 |
| Microtubule Studies on Lattice Dynamics and Severing Machine Guided Regulation M Kelly, R Dima, V Barsegov, EK Team, EK Team, KAM Team APS March Meeting Abstracts 2022, G06. 004, 2022 | | 2022 |
| Exploring secondary structural transitions in microtubule severing motors with machine learning A Macke, R Dima, M Kelly APS March Meeting Abstracts 2022, G06. 002, 2022 | | 2022 |
