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Boyko Kakaradov
Boyko Kakaradov
Principal Scientist, Skyhawk Therapeutics
Verified email at cs.stanford.edu
Title
Cited by
Cited by
Year
ButterflyNet: a mobile capture and access system for field biology research
R Yeh, C Liao, S Klemmer, F Guimbretière, B Lee, B Kakaradov, ...
Proceedings of the SIGCHI conference on Human Factors in computing systems …, 2006
3182006
Chemoselective covalent coupling of oligonucleotide probes to self-assembled monolayers
NK Devaraj, GP Miller, W Ebina, B Kakaradov, JP Collman, ET Kool, ...
Journal of the American Chemical Society 127 (24), 8600-8601, 2005
2832005
Early transcriptional and epigenetic regulation of CD8+ T cell differentiation revealed by single-cell RNA sequencing
B Kakaradov, J Arsenio, CE Widjaja, Z He, S Aigner, PJ Metz, B Yu, ...
Nature immunology 18 (4), 422-432, 2017
2342017
Early specification of CD8+ T lymphocyte fates during adaptive immunity revealed by single-cell gene-expression analyses
J Arsenio, B Kakaradov, PJ Metz, SH Kim, GW Yeo, JT Chang
Nature immunology 15 (4), 365-372, 2014
2312014
Paternally inherited cis-regulatory structural variants are associated with autism
WM Brandler, D Antaki, M Gujral, ML Kleiber, J Whitney, MS Maile, ...
Science 360 (6386), 327-331, 2018
2042018
Single-cell alternative splicing analysis with expedition reveals splicing dynamics during neuron differentiation
Y Song, OB Botvinnik, MT Lovci, B Kakaradov, P Liu, JL Xu, GW Yeo
Molecular cell 67 (1), 148-161. e5, 2017
1672017
Error correction of high-throughput sequencing datasets with non-uniform coverage
P Medvedev, E Scott, B Kakaradov, P Pevzner
Bioinformatics 27 (13), i137, 2011
1662011
Profiling of short-tandem-repeat disease alleles in 12,632 human whole genomes
H Tang, EF Kirkness, C Lippert, WH Biggs, M Fabani, E Guzman, ...
The American Journal of Human Genetics 101 (5), 700-715, 2017
1592017
Predicting the functional states of human iPSC-derived neurons with single-cell RNA-seq and electrophysiology
C Bardy, M Van Den Hurk, B Kakaradov, JA Erwin, BN Jaeger, ...
Molecular psychiatry 21 (11), 1573-1588, 2016
1522016
A complex-based reconstruction of the Saccharomyces cerevisiae interactome
H Wang, B Kakaradov, SR Collins, L Karotki, D Fiedler, M Shales, ...
Molecular & Cellular Proteomics 8 (6), 1361-1381, 2009
1162009
The dsRBP and inactive editor ADR-1 utilizes dsRNA binding to regulate A-to-I RNA editing across the C. elegans transcriptome
MC Washburn, B Kakaradov, B Sundararaman, E Wheeler, S Hoon, ...
Cell reports 6 (4), 599-607, 2014
732014
Transcriptome-wide off-target effects of steric-blocking oligonucleotides
EM Holgersen, S Gandhi, Y Zhou, J Kim, B Vaz, J Bogojeski, M Bugno, ...
nucleic acid therapeutics 31 (6), 392-403, 2021
532021
Regulation of asymmetric division and CD8+ T lymphocyte fate specification by protein kinase Cζ and protein kinase Cλ/ι
PJ Metz, J Arsenio, B Kakaradov, SH Kim, KA Remedios, K Oakley, ...
The Journal of Immunology 194 (5), 2249-2259, 2015
502015
Challenges in estimating percent inclusion of alternatively spliced junctions from RNA-seq data
B Kakaradov, HY Xiong, LJ Lee, N Jojic, BJ Frey
BMC bioinformatics 13 (Suppl 6), S11, 2012
412012
Reply to: "CD8+ T cell diversification by asymmetric cell division"
J Arsenio, B Kakaradov, PJ Metz, GW Yeo, JT Chang
Nature immunology 16 (9), 893-894, 2015
122015
Paternally inherited noncoding structural variants contribute to autism
WM Brandler, D Antaki, M Gujral, ML Kleiber, MS Maile, O Hong, ...
bioRxiv, 102327, 2017
102017
ATP7B variant c.1934T > G p.Met645Arg causes Wilson disease by promoting exon 6 skipping
D Merico, C Spickett, M O’Hara, B Kakaradov, AG Deshwar, P Fradkin, ...
NPJ genomic medicine 5 (1), 16, 2020
82020
SeeSite: Efficiently Finding Co-occurring Splice Sites and Exon Splicing Enhancers
C Lo, B Kakaradov, D Lokshtanov, C Boucher
arXiv preprint arXiv:1206.5846, 2012
7*2012
Comprehensive analysis of tumor NGS data to demonstrate pathways pointing to therapeutic targeting options.
S Krishnan, A Perlina, A Thomas, B Kakaradov, W Delport, RB Nehring, ...
Journal of Clinical Oncology 35 (15_suppl), e23153-e23153, 2017
2017
Tumor profiling from whole-genome and whole transcriptome sequencing to uncover gene fusions and structural variations in clinically relevant cancer genes.
AE Gylfe, E Shinbrot, B Kakaradov, W Delport, CK Lau, S Krishnan, ...
Journal of Clinical Oncology 35 (15_suppl), e23118-e23118, 2017
2017
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