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Martin F Thomsen
Martin F Thomsen
PhD student
Verified email at cbs.dtu.dk
Title
Cited by
Cited by
Year
Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two …
MCF Thomsen, M Nielsen
Nucleic acids research 40 (W1), W281-W287, 2012
3542012
A bacterial analysis platform: an integrated system for analysing bacterial whole genome sequencing data for clinical diagnostics and surveillance
MCF Thomsen, J Ahrenfeldt, JLB Cisneros, V Jurtz, MV Larsen, ...
PloS one 11 (6), e0157718, 2016
1482016
MHCcluster, a method for functional clustering of MHC molecules
M Thomsen, C Lundegaard, S Buus, O Lund, M Nielsen
Immunogenetics 65 (9), 655-665, 2013
1052013
Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles
L Roer, V Tchesnokova, R Allesøe, M Muradova, S Chattopadhyay, ...
Journal of Clinical Microbiology 55 (8), 2538-2543, 2017
982017
snpTree-a web-server to identify and construct SNP trees from whole genome sequence data
P Leekitcharoenphon, RS Kaas, MCF Thomsen, C Friis, S Rasmussen, ...
BMC genomics 13 (7), 1-8, 2012
962012
MGmapper: reference based mapping and taxonomy annotation of metagenomics sequence reads
TN Petersen, O Lukjancenko, MCF Thomsen, M Maddalena Sperotto, ...
PloS one 12 (5), e0176469, 2017
722017
WGS-based surveillance of third-generation cephalosporin-resistant Escherichia coli from bloodstream infections in Denmark
L Roer, F Hansen, MCF Thomsen, JD Knudsen, DS Hansen, M Wang, ...
Journal of Antimicrobial Chemotherapy 72 (7), 1922-1929, 2017
682017
CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli Based on the fumC and fimH Alleles
L Roer, TB Johannesen, F Hansen, M Stegger, V Tchesnokova, ...
Journal of Clinical Microbiology 56 (4), e00063-18, 2018
292018
RUCS: rapid identification of PCR primers for unique core sequences
MCF Thomsen, H Hasman, H Westh, H Kaya, O Lund
Bioinformatics 33 (24), 3917-3921, 2017
262017
PanFunPro: PAN-genome analysis based on FUNctional PROfiles
O Lukjancenko, MC Thomsen, MV Larsen, DW Ussery
F1000Research 2 (265), 265, 2013
252013
The COMPARE data hubs
C Amid, N Pakseresht, N Silvester, S Jayathilaka, O Lund, LD Dynovski, ...
Database 2019, 2019
232019
The CGE tool box
MV Larsen, KG Joensen, E Zankari, J Ahrenfeldt, O Lukjancenko, ...
Applied genomics of foodborne pathogens, 65-90, 2017
92017
Large scale automated phylogenomic analysis of bacterial isolates and the Evergreen Online platform
J Szarvas, J Ahrenfeldt, JLB Cisneros, MCF Thomsen, FM Aarestrup, ...
Communications biology 3 (1), 1-10, 2020
42020
Disk diffusion antimicrobial-susceptibility testing of the Bacteroides fragilis group using EUCAST clinical minimum inhibitory concentration MIC breakpoints
H Luu, MD Thomsen, F Hansen, DM Citron, G Kahlmeter, US Justesen
42013
Impact of task complexity on driving a gaze-controlled telerobot
G Zhang, K Minakata, A Alapetite, Z Wang, M Thomsen, JP Hansen
Scandinavian Workshop on Applied Eye Tracking (SWAET 2018)(Journal of Eye …, 2018
22018
Modelling the metastatic castration-resistant prostate cancer in mice by orthotopic delivering multiplexed gRNAs of CRISPR/Cas9 based on AAV system
H Cai, B Zhang, J Ahrenfeldt, N Birkbak, M Thomsen
Cancer Research 82 (12_Supplement), 924-924, 2022
2022
Impact of task complexity on driving a gaze‐controlled telerobot-DTU Orbit (11/10/2019)
G Zhang, K Minakata, A Alapetite, Z Wang, M Thomsen, JP Hansen
2018
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