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Helena L. Crowell
Helena L. Crowell
PhD candidate, University of Zurich, Switzerland
Verified email at uzh.ch - Homepage
Title
Cited by
Cited by
Year
CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets
M Nowicka, C Krieg, LM Weber, FJ Hartmann, S Guglietta, B Becher, ...
F1000Research 6, 2017
2862017
Compensation of signal spillover in suspension and imaging mass cytometry
S Chevrier, HL Crowell, VRT Zanotelli, S Engler, MD Robinson, ...
Cell systems 6 (5), 612-620. e5, 2018
2052018
Muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data
HL Crowell, C Soneson, PL Germain, D Calini, L Collin, C Raposo, ...
Nature communications 11 (1), 1-12, 2020
892020
On the discovery of subpopulation-specific state transitions from multi-sample multi-condition single-cell RNA sequencing data
HL Crowell, C Soneson, PL Germain, D Calini, L Collin, C Raposo, ...
BioRxiv, 713412, 2020
462020
CATALYST: Cytometry dATa anALYSis Tools
HL Crowell, VRT Zanotelli, S Chevrier, MD Robinson, B Bodenmiller
Bioconductor version: Release (3.11) 10, B9, 2020
352020
Feedback mechanisms control coexistence in a stem cell model of acute myeloid leukaemia
HL Crowell, AL MacLean, MPH Stumpf
Journal of Theoretical Biology 401, 43-53, 2016
202016
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor
D Righelli, LM Weber, HL Crowell, B Pardo, L Collado-Torres, ...
Bioinformatics 38 (11), 3128-3131, 2022
142022
CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data
A Lütge, J Zyprych-Walczak, UB Kunzmann, HL Crowell, D Calini, ...
Life science alliance 4 (6), 2021
132021
An R-based reproducible and user-friendly preprocessing pipeline for CyTOF data
HL Crowell, S Chevrier, A Jacobs, S Sivapatham, B Bodenmiller, ...
F1000Research 9 (1263), 1263, 2020
112020
CATALYST: cytometry dATa anALYSis tools, R package version 1.10. 1
H Crowell, V Zanotelli, S Chevrier, M Robinson
102020
CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets. F1000Research 6, 748
M Nowicka, C Krieg, HL Crowell
102019
Built on sand: the shaky foundations of simulating single-cell RNA sequencing data
HL Crowell, SXM Leonardo, C Soneson, MD Robinson
bioRxiv, 2021
52021
muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data. Nat. Commun. 11, 6077 (2020)
HL Crowell
5
Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma
KD Prummel, HL Crowell, S Nieuwenhuize, EC Brombacher, S Daetwyler, ...
Nature communications 13 (1), 1-21, 2022
42022
Predicting neurological recovery after traumatic spinal cord injury by time-resolved analysis of monocyte subsets
RA Heller, J Seelig, HL Crowell, M Pilz, P Haubruck, Q Sun, L Schomburg, ...
Brain 144 (10), 3159-3174, 2021
42021
distinct: a novel approach to differential distribution analyses
S Tiberi, HL Crowell, P Samartsidis, LM Weber, MD Robinson
bioRxiv, 2020.11. 24.394213, 2022
32022
On the discovery of population-specific state transitions from multi-sample multi-condition scRNA-seq data
HL Crowell, C Soneson, PL Germain, D Calini, L Collin, C Raposo, ...
GLIA 69, E61-E61, 2021
32021
Channel crosstalk correction in suspension and imaging mass cytometry
S Chevrier, H Crowell, V Zanotelli, S Engler, MD Robinson, B Bodenmiller
bioRxiv, 185744, 2017
12017
Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability
A Sonrel, A Luetge, C Soneson, IM Gonzalez, PL Germain, S Knyazev, ...
bioRxiv, 2022
2022
Selenium-Binding Protein 1 (SELENBP1) as Biomarker for Adverse Clinical Outcome After Traumatic Spinal Cord Injury
J Seelig, RA Heller, P Haubruck, Q Sun, GJ Klingenberg, J Hackler, ...
Frontiers in neuroscience 15, 680240, 2021
2021
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