Asa Ben-Hur

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Hava SiegelmannProfessor of Computer Science, and Brain Sciences, UMass AmherstVerified email at cs.umass.edu
Anireddy S.N. ReddyProfessor of Biology, Colorado State University, Fort Collins, USAVerified email at colostate.edu
William Stafford NobleProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Jason WestonFacebookVerified email at fb.com
Fayyaz ul Amir Afsar MinhasUniversity of WarwickVerified email at alumni.colostate.edu
vapnikProfessor of Columbia, Fellow of NEC Labs America, Verified email at nec-labs.com
Mark RogersInvitaeVerified email at bristol.ac.uk
Douglas BrutlagProfessor Emeritus of Biochemistry and Medicine, Stanford UniversityVerified email at stanford.edu
Shmuel FishmanTechnionVerified email at physics.technion.ac.il
Artem SokolovHarvard Medical SchoolVerified email at hms.harvard.edu
Cheng Soon OngData61, CSIRO, CanberraVerified email at anu.edu.au
Gunnar RätschProfessor, ETH ZürichVerified email at inf.ethz.ch
Soeren SonnenburgMachine Learning ResearcherVerified email at tomtom.com
Bernhard SchölkopfDirector, Max Planck Institute for Intelligent Systems; Professor at ETH ZürichVerified email at tuebingen.mpg.de
Karin VerspoorExecutive Dean, School of Computing Technologies, RMIT UniversityVerified email at rmit.edu.au
Indika KahandaUniversity of North FloridaVerified email at unf.edu
Alex FoutDepartment of Statistics, Colorado State UniversityVerified email at colostate.edu
Olivier ChapelleGoogleVerified email at chapelle.cc
Roded SharanTel Aviv UniversityVerified email at post.tau.ac.il
Robert ShaferProfessor of Medicine, Stanford UniversityVerified email at stanford.edu

Asa Ben-Hur

Computer Science, Colorado State University

Verified email at cs.colostate.edu - Homepage

Bioinformatics Machine learning


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Support vector clustering A Ben-Hur, D Horn, HT Siegelmann, V Vapnik Journal of machine learning research 2 (Dec), 125-137, 2001	1996	2001
A user’s guide to support vector machines A Ben-Hur, J Weston Data mining techniques for the life sciences, 223-239, 2010	1157	2010
A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013	920	2013
A stability based method for discovering structure in clustered data A Ben-Hur, A Elisseeff, I Guyon Pacific Symposium on Biocomputing 2002, 6-17, 2001	802	2001
Result analysis of the NIPS 2003 feature selection challenge I Guyon, S Gunn, A Ben-Hur, G Dror Advances in neural information processing systems 17, 2004	769	2004
Kernel methods for predicting protein–protein interactions A Ben-Hur, WS Noble Bioinformatics 21 (suppl_1), i38-i46, 2005	768	2005
Support vector machines and kernels for computational biology A Ben-Hur, CS Ong, S Sonnenburg, B Schölkopf, G Rätsch PLoS computational biology 4 (10), e1000173, 2008	734	2008
Protein interface prediction using graph convolutional networks AM Fout, J Byrd, B Shariat, A Ben-Hur Advances in Neural Information Processing Systems (NIPS), 2017	685	2017
A survey of the sorghum transcriptome using single-molecule long reads SE Abdel-Ghany, M Hamilton, JL Jacobi, P Ngam, N Devitt, F Schilkey, ... Nature communications 7 (1), 11706, 2016	426	2016
An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 1-19, 2016	360	2016
Large-scale identification of yeast integral membrane protein interactions JP Miller, RS Lo, A Ben-Hur, C Desmarais, I Stagljar, WS Noble, S Fields Proceedings of the National Academy of Sciences 102 (34), 12123-12128, 2005	339	2005
Genotypic predictors of human immunodeficiency virus type 1 drug resistance SY Rhee, J Taylor, G Wadhera, A Ben-Hur, DL Brutlag, RW Shafer Proceedings of the National Academy of Sciences 103 (46), 17355-17360, 2006	319	2006
Detecting stable clusters using principal component analysis A Ben-Hur, I Guyon Functional Genomics: Methods and Protocols, 159-182, 2003	286	2003
Choosing negative examples for the prediction of protein-protein interactions A Ben-Hur, WS Noble BMC bioinformatics 7 (1), 1-6, 2006	259	2006
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20 (1), 1-23, 2019	254	2019
RAMClust: a novel feature clustering method enables spectral-matching-based annotation for metabolomics data CD Broeckling, FA Afsar, S Neumann, A Ben-Hur, JE Prenni Analytical chemistry 86 (14), 6812-6817, 2014	247	2014
Remote homology detection: a motif based approach A Ben-Hur, D Brutlag Bioinformatics 19 (suppl_1), i26-i33, 2003	238	2003
Universality in sandpile models A Ben-Hur, O Biham Physical Review E 53 (2), R1317, 1996	177	1996
A support vector clustering method A Ben-Hur, D Horn, HT Siegelmann, V Vapnik Proceedings 15th International Conference on Pattern Recognition. ICPR-2000 …, 2000	167	2000
SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data MF Rogers, J Thomas, ASN Reddy, A Ben-Hur Genome biology 13 (1), 1-17, 2012	155	2012

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