Aimee R Taylor

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Daniel E. NeafseyHarvard TH Chan School of Public Health; Broad InstituteVerified email at broadinstitute.org
Rene NiehusHarvard T.H. Chan School of Public HealthVerified email at hsph.harvard.edu
Marc LipsitchDepartment of Epidemiology, Harvard School of Public HealthVerified email at hsph.harvard.edu
Pablo Martinez De SalazarSenior Research Collaborator, Swiss Tropical and Public Health InstituteVerified email at hsph.harvard.edu
James A WatsonOxford University Clinical Research UnitVerified email at tropmedres.ac
Francois NostenProfessor of Tropical Medicine, Oxford UniversityVerified email at tropmedres.ac
Grant DorseyProfessor of Medicine, University of California San FranciscoVerified email at ucsf.edu
Philip RosenthalProfessor of Pediatrics & Surgery, University of CA an FranciscoVerified email at peds.ucsf.edu
Stephen SchaffnerSenior Computational Biologist, Broad InstituteVerified email at broadinstitute.org
Chris HolmesVerified email at stats.ox.ac.uk
Nicholas WhiteProfessor of Tropical Medicine, Mahidol and Oxford UniversitiesVerified email at tropmedres.ac
Bryan GreenhouseAssociate Professor, University of California, San FranciscoVerified email at ucsf.edu
Melissa ConradPostdoctoral Scholar, University of California San FranciscoVerified email at ucsf.edu
Moses R KamyaMakerere University College of Health Sciences, Infectious Diseases ResearchVerified email at idrc-uganda.org
Philippe J GuerinUniversity of Oxford - Nuffield Department of Medicine - Centre for Tropical Medicine and GlobalVerified email at iddo.org
Jennifer FleggProfessor, University of MelbourneVerified email at unimelb.edu.au
Nicholas P J DayProfessor of Tropical Medicine, University of OxfordVerified email at ndm.ox.ac.uk
Mallika ImwongFaculty of Tropical Medicine, Mahidol UniversityVerified email at mahidol.edu
Pierre E. JacobESSEC Business SchoolVerified email at essec.edu
Aung Pyae PhyoMyanmar Oxford Clinical Research UnitVerified email at tropmedres.ac

Aimee R Taylor

Institut Pasteur

Verified email at pasteur.fr

malaria statistical genetics visualisation


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Using observational data to quantify bias of traveller-derived COVID-19 prevalence estimates in Wuhan, China R Niehus, PM De Salazar, AR Taylor, M Lipsitch The Lancet Infectious Diseases, 2020	173*	2020
Identifying locations with possible undetected imported severe acute respiratory syndrome coronavirus 2 cases by using importation predictions PM De Salazar, R Niehus, A Taylor, COF Buckee, M Lipsitch Emerging infectious diseases 26 (7), 1465, 2020	130*	2020
hmmIBD: software to infer pairwise identity by descent between haploid genotypes SF Schaffner, AR Taylor, W Wong, DF Wirth, DE Neafsey Malaria journal 17, 1-4, 2018	75	2018
Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent AR Taylor, SF Schaffner, GC Cerqueira, SC Nkhoma, TJC Anderson, ... PLoS genetics 13 (10), e1007065, 2017	75	2017
Mapping malaria by combining parasite genomic and epidemiologic data A Wesolowski, AR Taylor, HH Chang, R Verity, S Tessema, JA Bailey, ... BMC medicine 16 (1), 1-8, 2018	68	2018
Resolving the cause of recurrent Plasmodium vivax malaria probabilistically AR Taylor, JA Watson, CS Chu, K Puaprasert, J Duanguppama, NPJ Day, ... Nature communications 10 (1), 5595, 2019	63	2019
Advances and opportunities in malaria population genomics DE Neafsey, AR Taylor, BL MacInnis Nature Reviews Genetics 22 (8), 502-517, 2021	43	2021
Changing antimalarial drug resistance patterns identified by surveillance at three sites in Uganda P Tumwebaze, S Tukwasibwe, A Taylor, M Conrad, E Ruhamyankaka, ... The Journal of infectious diseases 215 (4), 631-635, 2016	43	2016
Estimating relatedness between malaria parasites AR Taylor, PE Jacob, DE Neafsey, CO Buckee Genetics 212 (4), 1337-1351, 2019	36	2019
Artemether-lumefantrine and dihydroartemisinin-piperaquine exert inverse selective pressure on Plasmodium falciparum drug sensitivity-associated haplotypes in Uganda AR Taylor, JA Flegg, CC Holmes, PJ Guérin, CH Sibley, MD Conrad, ... Open forum infectious diseases 4 (1), 2017	36	2017
Estimation of malaria haplotype and genotype frequencies: a statistical approach to overcome the challenge associated with multiclonal infections AR Taylor, JA Flegg, SL Nsobya, A Yeka, MR Kamya, PJ Rosenthal, ... Malaria journal 13 (1), 1-11, 2014	28	2014
A molecular barcode to inform the geographical origin and transmission dynamics of Plasmodium vivax malaria E Diez Benavente, M Campos, J Phelan, D Nolder, JG Dombrowski, ... PLoS genetics 16 (2), e1008576, 2020	20	2020
Evaluating the reliability of mobility metrics from aggregated mobile phone data as proxies for SARS-CoV-2 transmission in the USA: a population-based study N Kishore, AR Taylor, PE Jacob, N Vembar, T Cohen, CO Buckee, ... The Lancet Digital Health 4 (1), e27-e36, 2022	15*	2022
Identity-by-descent with uncertainty characterises connectivity of Plasmodium falciparum populations on the Colombian-Pacific coast AR Taylor, DF Echeverry, TJC Anderson, DE Neafsey, CO Buckee PLoS genetics 16 (11), e1009101, 2020	13*	2020
A decision-theoretic approach to the evaluation of machine learning algorithms in computational drug discovery OP Watson, I Cortes-Ciriano, AR Taylor, JA Watson Bioinformatics, 2019	10	2019
Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: a malaria case study E LaVerriere, P Schwabl, M Carrasquilla, AR Taylor, ZM Johnson, ... Molecular ecology resources 22 (6), 2285-2303, 2022	9	2022
Tafenoquine versus Primaquine to Prevent Relapse of Plasmodium vivax Malaria. JC Quinn, S McCarthy The New England journal of medicine 380 (19), 1875-1875, 2019	6	2019
Measurably recombining malaria parasites F Camponovo, CO Buckee, AR Taylor Trends in Parasitology, 2022	3	2022
A cautionary note on the use of unsupervised machine learning algorithms to characterise malaria parasite population structure from genetic distance matrices JA Watson, AR Taylor, EA Ashley, A Dondorp, CO Buckee, NJ White, ... PLoS genetics 16 (10), e1009037, 2020	3	2020
Pixelate to communicate: visualising uncertainty in maps of disease risk and other spatial continua AR Taylor, JA Watson, CO Buckee arXiv preprint arXiv:2005.11993, 2020	1	2020

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