Johan Hake
Title
Cited by
Cited by
Year
The FEniCS project version 1.5
M Alnæs, J Blechta, J Hake, A Johansson, B Kehlet, A Logg, ...
Archive of Numerical Software 3 (100), 2015
12232015
DOLFIN: a C++/Python finite element library
A Logg, GN Wells, J Hake
Automated Solution of Differential Equations by the Finite Element Method …, 2012
2142012
Modelling cardiac calcium sparks in a three‐dimensional reconstruction of a calcium release unit
J Hake, AG Edwards, Z Yu, PM Kekenes‐Huskey, AP Michailova, ...
The Journal of Physiology 590 (18), 4403-4422, 2012
762012
A three-dimensional finite element model of human atrial anatomy: new methods for cubic Hermite meshes with extraordinary vertices
MJ Gonzales, G Sturgeon, A Krishnamurthy, J Hake, R Jonas, P Stark, ...
Medical image analysis 17 (5), 525-537, 2013
502013
Slow Ca2+ sparks de-synchronize Ca2+ release in failing cardiomyocytes: Evidence for altered configuration of Ca2+ release units?
WE Louch, J Hake, HK Mørk, K Hougen, B Skrbic, D Ursu, T Tønnessen, ...
Journal of molecular and cellular cardiology 58, 41-52, 2013
492013
Control of Ca<sup>2+</sup> Release by Action Potential Configuration in Normal and Failing Murine Cardiomyocytes
WE Louch, J Hake, GF Jølle, HK Mørk, I Sjaastad, GT Lines, OM Sejersted
Biophysical journal 99 (5), 1377-1386, 2010
452010
Nonequilibrium Reactivation of Na+ Current Drives Early Afterdepolarizations in Mouse Ventricle
AG Edwards, E Grandi, JE Hake, S Patel, P Li, S Miyamoto, JH Omens, ...
Circulation: Arrhythmia and Electrophysiology 7 (6), 1205-1213, 2014
352014
Stochastic binding of Ca2+ ions in the dyadic cleft; continuous versus random walk description of diffusion
J Hake, GT Lines
Biophysical journal 94 (11), 4184-4201, 2008
332008
Modeling effects of L-type Ca2+ current and Na+-Ca2+ exchanger on Ca2+ trigger flux in rabbit myocytes with realistic t-tubule geometries
PM Kekenes-Huskey, Y Cheng, JE Hake, FB Sachse, JH Bridge, MJ Holst, ...
Frontiers in physiology 3, 351, 2012
242012
Space‐discretization error analysis and stabilization schemes for conduction velocity in cardiac electrophysiology
S Pezzuto, J Hake, J Sundnes
International journal for numerical methods in biomedical engineering 32 (10 …, 2016
222016
Towards simulation of subcellular calcium dynamics at nanometre resolution
J Chai, J Hake, N Wu, M Wen, X Cai, GT Lines, J Yang, H Su, C Zhang, ...
The International Journal of High Performance Computing Applications 29 (1 …, 2015
192015
Molecular and subcellular-scale modeling of nucleotide diffusion in the cardiac myofilament lattice
PM Kekenes-Huskey, T Liao, AK Gillette, JE Hake, Y Zhang, ...
Biophysical journal 105 (9), 2130-2140, 2013
192013
The FEniCS Project Version 1.5, Archive of Numerical Software, 3
MS Alnaes, J Blechta, J Hake, A Johansson, B Kehlet, A Logg, ...
DOI: https://doi. org/10.11588/ans 20553, 2015
182015
The FEniCS Project Version 1.5. Arch. Numer. Softw. 3,(2015)
MS Alnæs, J Blechta, J Hake, A Johansson, B Kehlet, A Logg, ...
18
Finite-element estimation of protein–ligand association rates with post-encounter effects: applications to calcium binding in troponin C and SERCA
PM Kekenes-Huskey, A Gillette, J Hake, JA McCammon
Computational science & discovery 5 (1), 014015, 2012
172012
uPy: a ubiquitous CG Python API with biological-modeling applications
L Autin, G Johnson, J Hake, A Olson, M Sanner
IEEE computer graphics and applications 32 (5), 50-61, 2012
152012
Computational modeling of subcellular transport and signaling
J Hake, PM Kekenes-Huskey, AD McCulloch
Current opinion in structural biology 25, 92-97, 2014
122014
Slow Calcium-Depolarization-Calcium waves may initiate fast local depolarization waves in ventricular tissue
A Tveito, GT Lines, AG Edwards, MM Maleckar, A Michailova, J Hake, ...
Progress in biophysics and molecular biology 110 (2-3), 295-304, 2012
112012
The fenics manual
MS Alnæs, J Hake, RC Kirby, HP Langtangen, A Logg, GN Wells
FEniCS Project, version October 31st 36, 2011
112011
Patient–specific parameter estimation for a transversely isotropic active strain model of left ventricular mechanics
S Gjerald, J Hake, S Pezzuto, J Sundnes, ST Wall
International Workshop on Statistical Atlases and Computational Models of …, 2014
92014
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Articles 1–20