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Anup Kumar Halder
Anup Kumar Halder
Assistant Professor(Research), University of Warsaw, Warsaw, Poland
Verified email at cent.uw.edu.pl
Title
Cited by
Cited by
Year
Bio-inspired cryptosystem with DNA cryptography and neural networks
S Basu, M Karuppiah, M Nasipuri, AK Halder, N Radhakrishnan
Journal of Systems Architecture 94, 24-31, 2019
472019
Drug repurposing for COVID-19 using computational screening: Is Fostamatinib/R406 a potential candidate?
S Saha, AK Halder, SS Bandyopadhyay, P Chatterjee, M Nasipuri, ...
Methods 203, 564-574, 2022
32*2022
Review of computational methods for virus–host protein interaction prediction: a case study on novel Ebola–human interactions
AK Halder, P Dutta, M Kundu, S Basu, M Nasipuri
Briefings in functional genomics 17 (6), 381-391, 2018
262018
Aggregated Network Centrality Shows Non-Random Structure of Genomic and Proteomic Networks
AK Halder, M Denkiewicz, K Sengupta, S Basu, D Plewczynski
Methods (https://doi.org/10.1016/j.ymeth.2019.11.006), 2019
172019
HdK-means: Hadoop based parallel K-means clustering for big data
SS Bandyopadhyay, AK Halder, P Chatterjee, M Nasipuri, S Basu
2017 IEEE Calcutta Conference (CALCON), 452-456, 2017
122017
ML-DTD: machine learning-based drug target discovery for the potential treatment of COVID-19
S Saha, P Chatterjee, AK Halder, M Nasipuri, S Basu, D Plewczynski
Vaccines 10 (10), 1643, 2022
92022
3gClust: Human Protein Cluster Analysis
AK Halder, P Chatterjee, M Nasipuri, D Plewczynski, S Basu
IEEE/ACM transactions on computational biology and bioinformatics 16 (6 …, 2018
92018
Computational modeling of human-nCoV protein-protein interaction network
SB Sovan Saha, Anup Kumar Halder, Soumyendu Sekhar Bandyopadhyay, Piyali ...
Methods (https://doi.org/10.1016/j.ymeth.2021.12.003) 203, 488-497, 2021
8*2021
JUPPI: A multi-level feature based method for PPI prediction and a refined strategy for performance assessment
AK Halder, SS Bandyopadhyay, P Chatterjee, M Nasipuri, D Plewczynski, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (1 …, 2022
62022
A survey on Ebola genome and current trends in computational research on the Ebola virus
P Dutta, AK Halder, S Basu, M Kundu
Briefings in Functional Genomics 17 (6), 374-380, 2018
62018
S-palmitoylation of synaptic proteins as a novel mechanism underlying sex-dependent differences in neuronal plasticity
M Zaręba-Kozioł, A Bartkowiak-Kaczmarek, M Roszkowska, K Bijata, ...
International Journal of Molecular Sciences 22 (12), 6253, 2021
52021
Assessment of GO-based protein interaction affinities in the large-scale human–coronavirus family interactome
SS Bandyopadhyay, AK Halder, S Saha, P Chatterjee, M Nasipuri, S Basu
Vaccines 11 (3), 549, 2023
42023
PFP-GO: Integrating protein sequence, domain and Protein-Protein Interaction Information for Protein Function Prediction using Ranked GO terms
K Sengupta, S Saha, A Kumar Halder, P Chatterjee, M Nasipuri, S Basu, ...
Frontiers in Genetics, 2635, 2022
42022
Prediction of chromatin looping using deep hybrid learning (DHL)
M Chiliński, AK Halder, D Plewczynski
Quantitative Biology 11 (2), 155-162, 2023
32023
Rule-based pruning and in silico identification of essential proteins in yeast PPIN
A Banik, S Podder, S Saha, P Chatterjee, AK Halder, M Nasipuri, S Basu, ...
Cells 11 (17), 2648, 2022
32022
RFCM-PALM: In-Silico Prediction of S-Palmitoylation Sites in the Synaptic Proteins for Male/Female Mouse Data
SS Bandyopadhyay, AK Halder, M Zaręba-Kozioł, ...
International Journal of Molecular Sciences 22 (18), 9901, 2021
32021
Prediction of thyroid cancer genes using an ensemble of post translational modification, semantic and structural similarity based clustering results
AK Halder, P Dutta, M Kundu, M Nasipuri, S Basu
International Conference on Pattern Recognition and Machine Intelligence …, 2017
32017
SeqPIP-2020: Sequence based Protein Interaction Prediction Contest
AK Halder, AF Mollah, P Chatterjee, DK Kole, S Basu, D Plewczyński
bioRxiv, 2020.11. 12.380774, 2020
22020
A systematic analyses of different bioinformatics pipelines for genomic data and its impact on deep learning models for chromatin loop prediction
AK Halder, A Agarwal, K Jodkowska, D Plewczynski
Briefings in Functional Genomics, elae009, 2024
12024
ccLoopER: Deep Prediction of CTCF and cohesin Mediated Chromatin looping Using DNA Transformer Model
AK Halder, A Agarwal, S Korsak, K Jodkowska, D Plewczynski
International Conference on Pattern Recognition and Machine Intelligence …, 2023
12023
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