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The short chain fatty acid butyrate imprints an antimicrobial program in macrophages
J Schulthess, S Pandey, M Capitani, KC Rue-Albrecht, I Arnold, ...
Immunity 50 (2), 432-445. e7, 2019
Comprehensive rare variant analysis via whole-genome sequencing to determine the molecular pathology of inherited retinal disease
KJ Carss, G Arno, M Erwood, J Stephens, A Sanchis-Juan, S Hull, K Megy, ...
The American Journal of Human Genetics 100 (1), 75-90, 2017
Orchestrating single-cell analysis with Bioconductor
RA Amezquita, ATL Lun, E Becht, VJ Carey, LN Carpp, L Geistlinger, ...
Nature methods 17 (2), 137-145, 2020
Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle
SDE Park, DA Magee, PA McGettigan, MD Teasdale, CJ Edwards, ...
Genome biology 16 (1), 1-15, 2015
Plasma metabolomics implicates modified transfer RNAs and altered bioenergetics in the outcomes of pulmonary arterial hypertension
CJ Rhodes, P Ghataorhe, J Wharton, KC Rue-Albrecht, C Hadinnapola, ...
Circulation 135 (5), 460-475, 2017
Phenotypic Characterization of EIF2AK4 Mutation Carriers in a Large Cohort of Patients Diagnosed Clinically With Pulmonary Arterial Hypertension
C Hadinnapola, M Bleda, M Haimel, N Screaton, A Swift, P Dorfmüller, ...
Circulation 136 (21), 2022-2033, 2017
RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis
KE McLoughlin, NC Nalpas, K Rue-Albrecht, JA Browne, DA Magee, ...
Frontiers in immunology 5, 396, 2014
Comprehensive cancer-predisposition gene testing in an adult multiple primary tumor series shows a broad range of deleterious variants and atypical tumor phenotypes
J Whitworth, PS Smith, JE Martin, H West, A Luchetti, F Rodger, G Clark, ...
The American Journal of Human Genetics 103 (1), 3-18, 2018
Comparative'omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine …
KM Malone, K Rue-Albrecht, DA Magee, K Conlon, OT Schubert, ...
Microbial genomics 4 (3), 2018
Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro
NC Nalpas, SDE Park, DA Magee, M Taraktsoglou, JA Browne, ...
BMC genomics 14 (1), 1-19, 2013
Comparative Functional Genomics and the Bovine Macrophage Response to Strains of the Mycobacterium Genus
K Rue-Albrecht, DA Magee, KE Killick, NC Nalpas, SV Gordon, ...
Frontiers in immunology 5, 536, 2014
iSEE: interactive summarizedexperiment explorer
K Rue-Albrecht, F Marini, C Soneson, ATL Lun
F1000Research 7, 2018
Experimental infection of cattle with Mycobacterium tuberculosis isolates shows the attenuation of the human tubercle bacillus for cattle
B Villarreal-Ramos, S Berg, A Whelan, S Holbert, F Carreras, FJ Salguero, ...
Scientific Reports 8 (1), 1-13, 2018
RNA sequencing provides exquisite insight into the manipulation of the alveolar macrophage by tubercle bacilli
NC Nalpas, DA Magee, KM Conlon, JA Browne, C Healy, KE McLoughlin, ...
Scientific reports 5 (1), 1-12, 2015
Bi-allelic loss-of-function CACNA1B mutations in progressive epilepsy-dyskinesia
KM Gorman, E Meyer, D Grozeva, E Spinelli, A McTague, A Sanchis-Juan, ...
The American Journal of Human Genetics 104 (5), 948-956, 2019
Biallelic mutation of ARHGEF18, involved in the determination of epithelial apicobasal polarity, causes adult-onset retinal degeneration
G Arno, KJ Carss, S Hull, C Zihni, AG Robson, A Fiorentino, G Black, ...
The American Journal of Human Genetics 100 (2), 334-342, 2017
GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data
K Rue-Albrecht, PA McGettigan, B Hernández, NC Nalpas, DA Magee, ...
BMC bioinformatics 17 (1), 1-12, 2016
De novo truncating mutations in WASF1 cause intellectual disability with seizures
Y Ito, KJ Carss, ST Duarte, T Hartley, B Keren, MA Kurian, I Marey, ...
The American Journal of Human Genetics 103 (1), 144-153, 2018
IL-1-driven stromal–neutrophil interactions define a subset of patients with inflammatory bowel disease that does not respond to therapies
M Friedrich, M Pohin, MA Jackson, I Korsunsky, SJ Bullers, ...
Nature medicine 27 (11), 1970-1981, 2021
Invasive Salmonella exploits divergent immune evasion strategies in infected and bystander dendritic cell subsets
A Aulicino, KC Rue-Albrecht, L Preciado-Llanes, G Napolitani, N Ashley, ...
Nature communications 9 (1), 1-17, 2018
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